Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30980
(745 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 45 1e-05
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 32 0.075
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 32 0.099
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo... 28 1.2
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 28 1.6
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 28 1.6
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 27 3.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.9
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 26 6.5
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 26 6.5
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 26 6.5
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 26 6.5
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 25 8.6
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni... 25 8.6
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 45.2 bits (102), Expect = 1e-05
Identities = 20/67 (29%), Positives = 40/67 (59%)
Frame = +2
Query: 518 IVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVF 697
I+ E++EK S+I++N+ + I++ GN+ G +RK H+ F+ + + + P+F
Sbjct: 84 IIYGFPEKEEKQSNIIYNSCIYITENGNLGGVYRKVHL-----FDTERKHFKKGSDFPIF 138
Query: 698 ATRYGKI 718
T +GK+
Sbjct: 139 ETSFGKL 145
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 32.3 bits (70), Expect = 0.075
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = -1
Query: 484 KVVVGPSSADSANSHHGCFSLVQNAKGIFHNSWKQMMLTPSWPATSMIFLTLLKIAFFCS 305
++ V S ++A SH CF QN+ + + + +P T F+ LLK AFF
Sbjct: 232 QIAVFHQSKNNAASH--CFLKDQNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDH 289
Query: 304 LTGR 293
L GR
Sbjct: 290 LFGR 293
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 31.9 bits (69), Expect = 0.099
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 545 EKHSDILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYMEGNTGHPVFATRY 709
E+ L+NTA+V +G +I HRK H IP F ES+ G+ + T Y
Sbjct: 129 ERKDGKLYNTAMVFDPSGKLIAVHRKIHLFDIDIPGGVSFRESDSLSPGD-AMTMVDTEY 187
Query: 710 GK 715
GK
Sbjct: 188 GK 189
>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 185
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +2
Query: 494 TRHQVAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYME 673
T+H V ++ S E+ EK+ ++W+ + + + K ++I + FNE + E
Sbjct: 87 TKHVVVYLVASYSTEKHEKNQVVVWDKILSSPEESKMFMKDTLSNI-QAHPFNEYSNQFE 145
Query: 674 G 676
G
Sbjct: 146 G 146
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 27.9 bits (59), Expect = 1.6
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +2
Query: 512 MVIVSSILERDEKHSDIL 565
+++VS++LE DEKH D++
Sbjct: 998 LIVVSNLLEMDEKHVDVV 1015
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 27.9 bits (59), Expect = 1.6
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -3
Query: 740 SEADVHRESCRIWSQIQDGRCYLPCSSWI 654
S H +SC++ Q +DG C++ +I
Sbjct: 434 SSLSCHSDSCKVSCQNEDGTCFISAKDYI 462
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 218 PRTSRPDPRELSSRNNSAFHR 280
PR RP+PRE SS ++ + R
Sbjct: 100 PRAGRPEPRERSSAADAGYRR 120
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 4.9
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +2
Query: 92 ATWKSSTEFILGGGITLKSN*KNPRSLQLRRLTSTSPHTLSRPRTSRPDPRELSSRNNSA 271
A +S+ ++ + S+ +P S LTS+S T S P TS SS ++S+
Sbjct: 201 APTSTSSSYLSSSSVVSSSS--SPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSS 258
Query: 272 FHRGAHRSSS 301
A SSS
Sbjct: 259 SSSTASSSSS 268
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3
Query: 578 PQCSKVCPNAFRPFLISRTRSPLLLDGEF 492
PQ PN+ P L S R PLL +F
Sbjct: 460 PQSESSSPNSVSPLLPSSDRLPLLRQSQF 488
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 76 NNLTGRDLEEFNRIHFGRRNNLEI 147
NN+ R +EE N I G+R LE+
Sbjct: 8 NNILKRHIEEDNNIDNGKRKKLEL 31
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 652 VKIADSRNVVLAMFSDHVSGVTNDNRSV 569
V I +S N++LA+F+ +GV D+R V
Sbjct: 484 VTIFESSNILLALFNTLSNGVWKDDRLV 511
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 46 ETHSLESII-NNNLTGRDLEEFNRIHFGRRNNLEIKLK 156
E H +E +I + N+T DL F + FG+ N ++ K
Sbjct: 369 EFHQVEGVICDRNITLGDLIGFLEVFFGKMNVKNLRFK 406
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 404 HIPQLLETDDVNTLLAGNIDDLLDFIENC 318
++P+LLE D+N L G + + LD + NC
Sbjct: 222 NLPKLLERPDINDLHQGILQE-LDSLCNC 249
>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 180
Score = 25.4 bits (53), Expect = 8.6
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Frame = -2
Query: 603 TFPVSLMTTAVFQSMSECFSSLSNIEDTITIAT*WRVPEG--RSWSAHLQLIRQTRTTAA 430
TF +S + + + S C S++ D + EG + W H+ I +
Sbjct: 26 TFNISFYLSYLNKWPSLCVVQESDLSDPTLMGYIMGKSEGTGKEWHTHVTAITVAPNSRR 85
Query: 429 SPLCRTRRAYSTTLGN 382
L RT Y T+GN
Sbjct: 86 LGLARTMMDYLETVGN 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,099,749
Number of Sequences: 5004
Number of extensions: 63759
Number of successful extensions: 239
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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