Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30979
         (363 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0544 + 34639419-34639455,34639763-34640096,34640186-34640480     29   1.1  
01_04_0011 + 15067536-15068236,15068283-15068898                       29   1.1  
09_01_0097 - 1450544-1452058                                           29   1.5  
03_06_0575 - 34828347-34828535,34828619-34828723,34829425-348296...    27   6.0  
02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523...    27   6.0  

>03_06_0544 + 34639419-34639455,34639763-34640096,34640186-34640480
          Length = 221

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 289 KPLFLLQHNLMTKTL*LTDGLISFLLWASSIKGPKLGFGG 170
           +PLFLL+  L  K +   DG +    W S+ + P++G GG
Sbjct: 118 RPLFLLRRGLQGKLM--ADGSVE---WPSTAEDPEVGLGG 152


>01_04_0011 + 15067536-15068236,15068283-15068898
          Length = 438

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = +2

Query: 20  GRRSLP---HRIRSVQDNQTAEESDGVPARQT 106
           GRR+LP     +R+V++   A+E+ G+P RQT
Sbjct: 308 GRRTLPSPGEMLRAVEEYNRAKEAAGLPKRQT 339


>09_01_0097 - 1450544-1452058
          Length = 504

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 23  RRSLPHRIRSVQDNQTAEESDGVPARQTAKIRSGH 127
           RR LP  + + QD+  AEE+D VP   T    + H
Sbjct: 193 RRDLPRVVPTKQDDVGAEEADPVPVLLTVADTAAH 227


>03_06_0575 -
           34828347-34828535,34828619-34828723,34829425-34829615,
           34829747-34829806,34829975-34830104,34830374-34830448,
           34830598-34830608,34830722-34830737
          Length = 258

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -2

Query: 254 EDFVTDRWSYQFLALGIQ--HQGSEVRVWGXHGAXVVRDXEHIVDVH 120
           ++ V DR  ++FL+  ++  +QG +    G  GA VVR+ E +V  H
Sbjct: 96  QEAVQDR-DHKFLSKAVEEAYQGVDCGHGGPFGAVVVRNDEIVVSCH 141


>02_05_0042 +
           25351648-25351724,25351983-25352010,25352311-25352373,
           25352880-25352945,25353029-25353076,25353338-25353379,
           25353499-25353714,25354066-25354188,25354352-25354564,
           25354930-25355016,25355259-25355507,25356386-25356507,
           25357135-25357225,25358467-25358882,25359489-25359609
          Length = 653

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 185 VRVWGXHGAXVVRDXEHIVDVHFESWQFVSQVRH 84
           V+VW   G  ++ D EH  +  F +W    +V H
Sbjct: 5   VKVWRTCGLRIMPDMEHQSEGRFFAWHIQIEVDH 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,763,337
Number of Sequences: 37544
Number of extensions: 160678
Number of successful extensions: 358
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)