Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30977
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   104   8e-24
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   103   1e-23
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    29   0.37 
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   1.5  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   1.5  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    27   2.6  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    26   4.6  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.1  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   8.0  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   8.0  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  104 bits (250), Expect = 8e-24
 Identities = 51/84 (60%), Positives = 62/84 (73%)
 Frame = +1

Query: 256 TKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDEL 435
           T+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S   KDE+
Sbjct: 83  TQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEI 142

Query: 436 IIEGNSLEDVSSSXALIQQSTTVK 507
           IIEGNSLE+VS S A I+Q   V+
Sbjct: 143 IIEGNSLENVSQSAANIKQICNVR 166



 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 35/101 (34%), Positives = 59/101 (58%)
 Frame = +2

Query: 14  KQIVANXKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 193
           + I  +  + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKK-QGNTIKFIVWHGS 61

Query: 194 KKELAAVRTVCSHVENMIKGELKASNTRCVLCMLTSPLTVS 316
           +K  A +RT  S + NMI G  +    +  L     P+ ++
Sbjct: 62  RKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININ 102



 Score = 31.5 bits (68), Expect = 0.092
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +3

Query: 504 QDKDIRXFLDGLYVSEKTTV 563
           ++KDIR FLDG+YVSE+  +
Sbjct: 166 RNKDIRKFLDGIYVSERGNI 185


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  103 bits (248), Expect = 1e-23
 Identities = 50/84 (59%), Positives = 62/84 (73%)
 Frame = +1

Query: 256 TKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDEL 435
           T+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S   KDE+
Sbjct: 83  TQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEI 142

Query: 436 IIEGNSLEDVSSSXALIQQSTTVK 507
           I+EGNSLE+VS S A I+Q   V+
Sbjct: 143 ILEGNSLENVSQSAANIKQICNVR 166



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 34/101 (33%), Positives = 57/101 (56%)
 Frame = +2

Query: 14  KQIVANXKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 193
           + I  +  + IP G+TV +K+R VTV GPRG LK+N +H+ ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGS 61

Query: 194 KKELAAVRTVCSHVENMIKGELKASNTRCVLCMLTSPLTVS 316
           +K  A +R+V S + NMI G  +    +  L     P+ ++
Sbjct: 62  RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININ 102



 Score = 31.5 bits (68), Expect = 0.092
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +3

Query: 504 QDKDIRXFLDGLYVSEKTTV 563
           ++KDIR FLDG+YVSE+  +
Sbjct: 166 RNKDIRKFLDGIYVSERGNI 185


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 330 ITLSGDTVNGEVSIHSTHLVLEAFSSPLI 244
           +T+  D   G VS H+ HLV  A SSP +
Sbjct: 268 LTIHADHEGGNVSAHTGHLVGSALSSPFL 296


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +2

Query: 41   KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 208
            K+PDG+ +   SRL      K P    L   F H +VD+ +    L + E WF       
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622

Query: 209  AVRTVCSHVENMI 247
             + T+CS + N++
Sbjct: 1623 VLATICSCLGNLL 1635


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +1

Query: 409 NSPKQKDELIIEGNSLEDVSSSXALIQQS 495
           +SPK+K +L ++G  L+ +  + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 158 PRLLKVEKWFGSKKELAAVRTVCSHVENMIKGEL 259
           PRL+  +KW      L A+ ++    E ++K EL
Sbjct: 377 PRLIPSQKWSERHAALMAISSIAEGAEKLMKKEL 410


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 6/23 (26%), Positives = 16/23 (69%)
 Frame = -1

Query: 414 RVNDSHTRCHLYPSDVFLPQEVT 346
           ++N++++ CH YP  + +P  ++
Sbjct: 152 KINENYSECHSYPQALAVPASIS 174


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 207 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 97
           A SFL+P   STF R  F+  +S   C +   LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 217 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFKVPFENSAGP 95
           PH GK    S   +N  E+R   A+V+S   + PF    GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -3

Query: 223 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFKVPFENSAGPFNCHQT 77
           D P+G     GS  F+      V+H+N N+    +  +N     N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,397
Number of Sequences: 5004
Number of extensions: 49467
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)