Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30977
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    107   5e-24
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   107   5e-24
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177...    28   4.7  
03_06_0712 - 35683814-35684065,35685296-35685466                       27   8.2  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  107 bits (258), Expect = 5e-24
 Identities = 51/84 (60%), Positives = 62/84 (73%)
 Frame = +1

Query: 256 TKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDEL 435
           TKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S K KDEL
Sbjct: 84  TKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDEL 143

Query: 436 IIEGNSLEDVSSSXALIQQSTTVK 507
           +++GN +E VS S ALI Q   VK
Sbjct: 144 VLDGNDIELVSRSAALINQKCHVK 167



 Score = 93.9 bits (223), Expect = 8e-20
 Identities = 42/85 (49%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
 Frame = +2

Query: 11  MKQIVANXKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-NPRLLKVEKWF 187
           MK I+A+  ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++   R L+V+ WF
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60

Query: 188 GSKKELAAVRTVCSHVENMIKGELK 262
           G+++ +AA+RT  SHV+N+I G  K
Sbjct: 61  GTRRTMAAIRTAISHVQNLITGVTK 85



 Score = 34.7 bits (76), Expect = 0.054
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = +3

Query: 504 QDKDIRXFLDGLYVSEKTTVVLD 572
           ++KDIR FLDG+YVS+K T+  D
Sbjct: 167 KNKDIRKFLDGIYVSDKGTITED 189


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  107 bits (258), Expect = 5e-24
 Identities = 51/84 (60%), Positives = 62/84 (73%)
 Frame = +1

Query: 256 TKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDEL 435
           TKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S K KDEL
Sbjct: 77  TKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDEL 136

Query: 436 IIEGNSLEDVSSSXALIQQSTTVK 507
           +++GN +E VS S ALI Q   VK
Sbjct: 137 VLDGNDIELVSRSAALINQKCHVK 160



 Score = 87.8 bits (208), Expect = 5e-18
 Identities = 39/78 (50%), Positives = 59/78 (75%), Gaps = 3/78 (3%)
 Frame = +2

Query: 38  VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV---NPRLLKVEKWFGSKKELA 208
           ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++     R L+V+ WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60

Query: 209 AVRTVCSHVENMIKGELK 262
           A+RT  SHV+N+I G  K
Sbjct: 61  AIRTAISHVQNLITGVTK 78



 Score = 34.7 bits (76), Expect = 0.054
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = +3

Query: 504 QDKDIRXFLDGLYVSEKTTVVLD 572
           ++KDIR FLDG+YVS+K T+  D
Sbjct: 160 KNKDIRKFLDGIYVSDKGTITED 182


>07_01_0242 +
           1775704-1776797,1776839-1777759,1778312-1778412,
           1778770-1778900,1779530-1779788,1779823-1780098,
           1780100-1781352
          Length = 1344

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 206 AAVRTVCSHVENMIKGELKASNTRCVLCMLTSPLTVSPLRVIQLLRYVTSWG 361
           A V     H    IKG ++A+  R +LC      T+  L  I+  R ++ WG
Sbjct: 758 ARVAFKLKHTRTTIKGWMQANRKRGILCE-DCKFTIDYLDCIEEFRRLSEWG 808


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +2

Query: 107 VLKRNF-KHLAVDIRMVNPRLLKVE 178
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,696,542
Number of Sequences: 37544
Number of extensions: 321648
Number of successful extensions: 720
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)