Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30977
(579 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal pro... 106 1e-23
U10401-7|AAA19056.1| 504|Caenorhabditis elegans Hypothetical pr... 31 0.78
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr... 27 7.3
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ... 27 7.3
U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore co... 27 9.6
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co... 27 9.6
U41019-3|AAA82329.3| 531|Caenorhabditis elegans Sop-2 related (... 27 9.6
AF077546-8|AAC26320.2| 649|Caenorhabditis elegans Hypothetical ... 27 9.6
>AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 9 protein.
Length = 189
Score = 106 bits (254), Expect = 1e-23
Identities = 49/84 (58%), Positives = 61/84 (72%)
Frame = +1
Query: 256 TKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDEL 435
T GF+YKMR+VYAHFPIN +GN +EIRNFLGEK +RRV + GV S QKDE+
Sbjct: 83 TVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEI 142
Query: 436 IIEGNSLEDVSSSXALIQQSTTVK 507
++EGN ++ VS + A IQQST VK
Sbjct: 143 VVEGNDVQFVSQAAARIQQSTAVK 166
Score = 99.5 bits (237), Expect = 1e-21
Identities = 42/81 (51%), Positives = 61/81 (75%)
Frame = +2
Query: 11 MKQIVANXKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 190
MK I +N V P+G+T VK+R+V V GPRG ++++F+HL +++ + L+V KWFG
Sbjct: 1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60
Query: 191 SKKELAAVRTVCSHVENMIKG 253
+KELAA+RTVCSH++NMIKG
Sbjct: 61 VRKELAAIRTVCSHIKNMIKG 81
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 504 QDKDIRXFLDGLYVSEKTTVVLDD 575
++KDIR FLDG+YVSEKTT+V D
Sbjct: 166 KEKDIRKFLDGIYVSEKTTIVPTD 189
>U10401-7|AAA19056.1| 504|Caenorhabditis elegans Hypothetical
protein T20B12.3 protein.
Length = 504
Score = 30.7 bits (66), Expect = 0.78
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = -1
Query: 264 AFSSPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 124
+ ++P +++ + ++++LT SFL H T+ F R+S +CL
Sbjct: 274 SLTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318
>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
protein M110.4b protein.
Length = 1155
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 139 NSQVFKVPFENSAGPFNCHQTRFHMDR 59
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
protein M110.4a protein.
Length = 1156
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 139 NSQVFKVPFENSAGPFNCHQTRFHMDR 59
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
protein D1007.15 protein.
Length = 1184
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +1
Query: 256 TKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 390
+ F Y + +++ FPI C+ + I+ + +G Y+R V ++
Sbjct: 1086 SSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130
>U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform b protein.
Length = 889
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 539 KTIQELSDILILTVVDCWMRAXELETSSKELPSMIN 432
+ I SDI+ D W++A +ET K+LPS I+
Sbjct: 277 RKISVQSDIVFAVTRDGWVQAWNVET-KKQLPSTID 311
>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform a protein.
Length = 1562
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 539 KTIQELSDILILTVVDCWMRAXELETSSKELPSMIN 432
+ I SDI+ D W++A +ET K+LPS I+
Sbjct: 277 RKISVQSDIVFAVTRDGWVQAWNVET-KKQLPSTID 311
>U41019-3|AAA82329.3| 531|Caenorhabditis elegans Sop-2 related
(ectopic expressionof hox genes) protein 3 protein.
Length = 531
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -1
Query: 186 NHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVTRRDFT 67
NH ++R+ M T K + TP G L +T + T
Sbjct: 427 NHIPDYKRKDLLKSMDTLKFCEIFRPTPTGALQLTAAEVT 466
>AF077546-8|AAC26320.2| 649|Caenorhabditis elegans Hypothetical
protein T08E11.1 protein.
Length = 649
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -1
Query: 288 HSTHLVLEAFSSPLIMFSTCEQTVLTAAS-SFLDPNHFSTFRRRGFTMRMSTAKCLKF 118
++TH+ LE S P FS CE + A+ S D +G ++R +C F
Sbjct: 182 NATHIKLEGVSVPFDNFSHCEDVRIHASKVSANDIQTLVEIAYKGSSLRFFYVRCDSF 239
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,400,668
Number of Sequences: 27780
Number of extensions: 279484
Number of successful extensions: 611
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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