Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30976
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0629 + 5464282-5464304,5464367-5465528                           33   0.13 
05_03_0586 + 15782645-15782721,15782781-15783405                       28   5.0  

>08_01_0629 + 5464282-5464304,5464367-5465528
          Length = 394

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -1

Query: 163 CTIPNNL*SVPFGHTLLGVYLDVFGTGRGILRM-MPSSWYSRSQGLNSSCPP 11
           C I NNL S  +GH L     ++  +GR +L M +  +W+SR++ ++    P
Sbjct: 127 CFISNNLASTDYGHWLFDCLENLADSGRSLLLMVLWRNWFSRNEIMHGKPAP 178


>05_03_0586 + 15782645-15782721,15782781-15783405
          Length = 233

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 132 RSVTRCSESTWMSSALDEESCG*CP 58
           R +  CS + W +   D++ CG CP
Sbjct: 142 RPIVCCSSACWKAVGHDDQQCGHCP 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,719,903
Number of Sequences: 37544
Number of extensions: 279518
Number of successful extensions: 654
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)