Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30975
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    30   0.31 
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    27   1.6  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.8  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    26   5.0  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   6.6  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   6.6  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    25   6.6  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    25   8.7  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
 Frame = +3

Query: 246 HGESEGGAETRGDR----GEAPRDNTVRHVYNARLSASDYYTVSEDVTPQPFKGTYDEDL 413
           HG  EG  ET+G +    G +   +  R   N + SAS    V E       K T    L
Sbjct: 53  HGRFEGSVETKGGKLVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHL 112

Query: 414 LLGS-RVLVFCMSADAPCFAAMV 479
             G+ RV++   S DAP F   V
Sbjct: 113 KGGAKRVIISAPSKDAPMFVVGV 135


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 23/80 (28%), Positives = 36/80 (45%)
 Frame = -2

Query: 490 CAASTIAAKQGASALMQNTSTREPSNRSSSYVPLKGWGVTSSETV**SEALSLALYTWRT 311
           C   T     G+S      +   PS+ SS++VP+     TSS T   S  LS++  +  +
Sbjct: 30  CVRYTTIYSSGSSEFTSTITPETPSSSSSTFVPISTH--TSSATNTTSGQLSIS--SSSS 85

Query: 310 VLSRGASPRSPLVSAPPSDS 251
             S  +S   P+ +   SDS
Sbjct: 86  TSSEYSSSSIPITTVSSSDS 105


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 481 STIAAKQGASALMQNTSTREPSNRSSSYVPLKGW 380
           ++ A ++ + ALM  + TR+P N+ S Y+   GW
Sbjct: 450 NSYAIEETSRALMGTSKTRKPENK-SKYLIKNGW 482


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 541 VHGLNDEHGVGGRSPM*CAASTIAAKQGASALMQNTSTREPSNRSSS 401
           V G++ E+ +GG S + C      A QGAS+ M        ++ +SS
Sbjct: 467 VGGIHGENRLGGSSLLACVVFGRLAGQGASSTMLRRFIASSTSTASS 513


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
 Frame = +3

Query: 234 KSERHGESEGGAETRGDRGEAPRDNTVRHVYNARLSAS------DYYTVSEDVTPQPFKG 395
           KS R+   E    +R    +  R +++ +  N RLS         Y T+   +   P  G
Sbjct: 189 KSSRNRRRESSF-SREKNPDLTRSDSIHYTANTRLSEKFEEQGLAYSTIFSHIESFPITG 247

Query: 396 TYDEDLLLGSRVLV 437
           +   D +LG+ VLV
Sbjct: 248 STSFDSILGNGVLV 261


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 526 DEHGVGGRSPM*CAASTIAAKQGASALMQNTSTREPSNRSSS 401
           ++    GRSP    A+      G    M+    R+PSNR +S
Sbjct: 372 NQTNTSGRSPNSMEATEQIGTIGTDGSMKRRKRRQPSNRKTS 413


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = +1

Query: 46  KRAYDAAGGRNGRLPRTRAVDALKEVTRTSKENAERSLPAVDFIDFETFCAAVAE-LATD 222
           K A    G  N  L   RAVDA+ +V R + ++AE      D          V E L  D
Sbjct: 97  KGASTGVGLGNAFLSHVRAVDAIYQVVR-AFDDAEIIHVEGDVDPIRDLSIIVDELLIKD 155

Query: 223 AEWQNRNGTESLKVVQKRGVTVVK 294
           AE+  ++  E L+ +  RG   ++
Sbjct: 156 AEFVEKH-LEGLRKITSRGANTLE 178


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 267 AETRGDRGEAPRDNTVRHVYNARLSASDYYTVSEDVTPQPF 389
           A+   +  + P D      Y+ ++S+SD+YT S +   + F
Sbjct: 312 AQKNAESNKQPEDAPSESPYSNKVSSSDFYTRSFEEIEKTF 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,164,309
Number of Sequences: 5004
Number of extensions: 39085
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)