Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30975
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0743 - 21118619-21119071 33 0.18
12_02_0554 + 20351660-20352299,20398588-20398907,20399120-203993... 32 0.42
11_04_0435 + 17710853-17711003,17711312-17711547,17712417-17712752 31 0.96
03_05_0173 + 21502765-21504216 30 1.3
12_02_1032 + 25542420-25542573,25543511-25543577,25543816-255439... 29 3.9
12_02_1140 + 26411424-26411998,26412491-26412761,26412848-26413405 28 5.1
06_03_1036 + 27053480-27053729,27054616-27054704,27054881-270549... 28 5.1
05_06_0149 - 25991761-25993181,25993246-25993324 28 5.1
10_08_0531 + 18576913-18578058,18578724-18578843,18578924-185789... 28 6.8
07_03_0015 - 12447947-12448393 28 6.8
06_01_1061 + 8562039-8562485 28 6.8
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 27 8.9
>07_03_0743 - 21118619-21119071
Length = 150
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 463 ASRRWCWPRT-TWGCGRQHRAHRSTHGQE 546
AS RWCWP T W GR+ A H +E
Sbjct: 91 ASARWCWPHTQPWPDGRRREAVEVLHEEE 119
>12_02_0554 +
20351660-20352299,20398588-20398907,20399120-20399344,
20399375-20399818
Length = 542
Score = 31.9 bits (69), Expect = 0.42
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 237 SERHGESEGGAETRGDRGEAPRDNTVRHV 323
S +HG+++G A+ D+G PRD V V
Sbjct: 87 SSKHGKAKGSADNSSDKGGEPRDGEVEDV 115
>11_04_0435 + 17710853-17711003,17711312-17711547,17712417-17712752
Length = 240
Score = 30.7 bits (66), Expect = 0.96
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 568 FAVSGRGL-PVHGLNDEHGVGGRSPM*CAASTIAAK-QGASALMQNTSTREP 419
F ++G GL P + G G + P CA +TIA + G SA+++N P
Sbjct: 95 FRLAGNGLSPYPAMKHATGDGSKPPCNCAETTIAKRNDGLSAVLRNVLAVTP 146
>03_05_0173 + 21502765-21504216
Length = 483
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 231 AKSERHGESEGGAETRGDRGEAPRDNTVRHVYNARLS 341
A +++ G+ +GGA RG RG+ ++N V + + +S
Sbjct: 356 AGNQQQGQRKGGANRRGGRGQGNKNNNVANTNISNMS 392
>12_02_1032 +
25542420-25542573,25543511-25543577,25543816-25543918,
25544435-25544505,25544639-25544702,25545260-25545316,
25545435-25545593,25545967-25546035,25546111-25546202,
25546579-25546657,25546923-25547088,25547480-25547604,
25547737-25548078,25548271-25548432,25548520-25548624,
25548766-25548860,25548948-25549044,25549848-25550165,
25550228-25550296
Length = 797
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +1
Query: 64 AGGRNGRLPRTRAVDALKEVTRTSKENAERSLPAVDFIDFETFCAAVAE-----LATDAE 228
AG R G +P + + + +++ + +EN + LPA + C +A L +DAE
Sbjct: 190 AGDRRGVVPASGFLFSSQQIWKVIRENKDLDLPAHKVMVATVRCDEIAHEKFSCLTSDAE 249
Query: 229 W 231
W
Sbjct: 250 W 250
>12_02_1140 + 26411424-26411998,26412491-26412761,26412848-26413405
Length = 467
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 607 TSNVGRDCSPSXXFAVSGRGLPVHGL 530
TS G P A+ G G+PVHG+
Sbjct: 339 TSGAGEVIRPGQLKAIDGEGMPVHGM 364
>06_03_1036 +
27053480-27053729,27054616-27054704,27054881-27054950,
27055145-27055228,27055332-27055408,27055519-27055583,
27055723-27055765,27055889-27055952,27056126-27056254,
27056522-27056625,27056724-27056828
Length = 359
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 366 RRRYSSQRRLVWRCTRGARCCPGALHHGH 280
R+ Y QRRL+ G RC PG GH
Sbjct: 216 RQVYGGQRRLLDTALTGCRCPPGFQGDGH 244
>05_06_0149 - 25991761-25993181,25993246-25993324
Length = 499
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 79 GRLPRTRAVDALKEVTRTSKENAERSLPAVDFIDFETFCAAVAELATD 222
G P R+ D LK +E RSLPAVD + + FC ++A +
Sbjct: 103 GAHPIKRSHDTLKLANPVLREFL-RSLPAVDALLLDMFCVDALDVAAE 149
>10_08_0531 +
18576913-18578058,18578724-18578843,18578924-18578970,
18579588-18579630
Length = 451
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 396 TYDEDLLLGSRVLVFCMSADAPCFAAMVLAAHYMG 500
TY E +G RV+ FC CF+ VL H G
Sbjct: 34 TYVELRRVGKRVIFFCTICLTECFSDTVLFDHLKG 68
>07_03_0015 - 12447947-12448393
Length = 148
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 57 RCSRWAKRSVTSHQGGRRPQRSDENVERE 143
RC RW RS + +GGRR R D +++
Sbjct: 42 RCRRWWWRSEPTSRGGRRGGRRDVGDDKD 70
>06_01_1061 + 8562039-8562485
Length = 148
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 36 PSVETRLRCSRWAKRSVTSHQGGRRPQRSDENVERE 143
P LRC RW RS + +GG R R D E +
Sbjct: 35 PRATLPLRCRRWWWRSEPTSRGGGRGGRRDVGDEED 70
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 109 RRPPWCEVTDRFAHRLHRRRVSTEGSCDRATVA 11
R PP E+ + + H+R++ GS +R T A
Sbjct: 413 RYPPCKEIDVKLKYEKHKRKLRANGSVERQTTA 445
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,332,300
Number of Sequences: 37544
Number of extensions: 339828
Number of successful extensions: 1346
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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