Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30975
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical ...    29   2.6  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    27   8.1  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      27   8.1  
AF039046-2|AAB94218.2|  516|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical
           protein Y71A12B.4 protein.
          Length = 1913

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 3   DAPATVARSHDPSVETRLRCSRWAKRSVTSHQGGRRPQRSDENVERER 146
           +   T  R +DP+  T+ R S     S  +  G  RP+ +DE ++R R
Sbjct: 55  EVTTTTTRPYDPAPPTQTRTS---SGSTVNGWGENRPKSADEEIKRRR 99


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
 Frame = -2

Query: 502  SPM*CAASTIAAKQGASALMQNTSTREPSNRSSSYVPLKGWGVTSSETV**SEALSLALY 323
            SP    +STI + QG+++ + +T++ + +++ S+ +P    G T S TV      S +  
Sbjct: 1122 SPSPSQSSTIGSSQGSTSPVVSTTSGDMTSQGSTQIP----GSTGS-TVTQPSTGSGSTS 1176

Query: 322  TWRTVLSRGA--SPRSPLVSAP 263
            T   + S+G+  +PRS L ++P
Sbjct: 1177 TSGEITSQGSTQTPRSSLSTSP 1198


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/65 (27%), Positives = 34/65 (52%)
 Frame = +2

Query: 149 NGACPP*TLSTLKRFARPSPNSQPTQNGKIGTARRV*RWCRNEG*PW*SAPGQHRAPRVQ 328
           NG     ++S ++R   PSP+     N ++G+ ++     R +  P  ++P + R+P  +
Sbjct: 444 NGRHDSRSVSPVRRRRSPSPD-----NRQLGSRKQYSPLRRRQSSPMVASPRRRRSPSPE 498

Query: 329 RQTKR 343
           RQ KR
Sbjct: 499 RQRKR 503


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/65 (27%), Positives = 34/65 (52%)
 Frame = +2

Query: 149 NGACPP*TLSTLKRFARPSPNSQPTQNGKIGTARRV*RWCRNEG*PW*SAPGQHRAPRVQ 328
           NG     ++S ++R   PSP+     N ++G+ ++     R +  P  ++P + R+P  +
Sbjct: 444 NGRHDSRSVSPVRRRRSPSPD-----NRQLGSRKQYSPLRRRQSSPMVASPRRRRSPSPE 498

Query: 329 RQTKR 343
           RQ KR
Sbjct: 499 RQRKR 503


>AF039046-2|AAB94218.2|  516|Caenorhabditis elegans Hypothetical
           protein R09B5.11 protein.
          Length = 516

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 61  AAGGRNGRLPRTRAVDALKEVTRTSKENAERSLPAVDFIDFETFCAAVAELAT 219
           A+  +N R       ++   V ++ KEN  +SLP  ++  F  FC +   LA+
Sbjct: 6   ASQNKNDRSFSNMESESSSNVEKSEKENHHQSLPDENWTPFLFFCISSIALAS 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,531,900
Number of Sequences: 27780
Number of extensions: 240296
Number of successful extensions: 721
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)