Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30974
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    29   0.47 
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   5.8  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 23/66 (34%), Positives = 29/66 (43%)
 Frame = +1

Query: 154 PPRGAATPWPAAARCSSGSETLHRGSHSWPRWQISRC*EVAECPSVARWTAEP*SLYHSY 333
           PP G+ TP PAAA  S  S  + + S S P  Q          PS  ++   P     SY
Sbjct: 286 PPHGSTTPLPAAA--SYTSMNMKQSSASHPVLQ-------PPAPSTLQFNPSPSPAAPSY 336

Query: 334 PPMRCS 351
           PP+  S
Sbjct: 337 PPVDAS 342


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 511 IMVDLPLTVLTWVRGPEPASNSHTLTLPVYLN 606
           +++DL +    W   P+P    H++T  VY N
Sbjct: 337 LVIDLVIENHKWTNAPKPVCVIHSVTPEVYKN 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,666,512
Number of Sequences: 5004
Number of extensions: 53114
Number of successful extensions: 143
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)