Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30974
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497... 36 0.039
12_02_0901 + 24171515-24171757,24172452-24172657,24173590-241738... 32 0.37
04_04_1563 - 34445832-34445891,34445981-34446097,34447363-344474... 30 2.0
09_04_0720 - 19720844-19720975,19721582-19721809,19722108-197222... 29 2.6
04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158 29 2.6
12_01_0461 + 3618414-3618782,3619664-3619794,3620177-3620294,362... 29 3.4
01_06_0870 + 32601939-32602261,32602368-32602563,32603962-326040... 29 3.4
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389... 29 4.5
07_03_1587 + 27937243-27937251,27937813-27937872,27938007-279380... 28 6.0
04_04_1497 - 33996990-33997178,33997915-33998127,33998320-339985... 28 6.0
10_05_0020 - 8094412-8094653,8094692-8095017,8095632-8095798 28 7.9
04_03_0320 - 14316934-14318550 28 7.9
02_05_0825 - 32042128-32042238,32042905-32043246,32043548-32043727 28 7.9
02_02_0301 + 8759230-8759543,8760018-8760030 28 7.9
>09_04_0695 -
19547101-19548010,19548089-19548587,19549461-19549728,
19551025-19551687,19551849-19552060,19552203-19552593,
19552659-19553107,19553454-19553790
Length = 1242
Score = 35.5 bits (78), Expect = 0.039
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 157 PRGAATPWPAAARCSSGSETLHRGSHSWPRWQISRC*EVAEC-PSVARWTAEP*SLYHSY 333
P GA++P +A+CSSGS + GS W S EV E PS AR A S H
Sbjct: 29 PAGASSPAATSAQCSSGSSS---GSQEKVDWDFSDDDEVVESPPSPARQMAGQASAAHEA 85
Query: 334 PPM 342
P+
Sbjct: 86 TPL 88
>12_02_0901 +
24171515-24171757,24172452-24172657,24173590-24173869,
24174214-24174321,24174484-24174737,24174820-24174910
Length = 393
Score = 32.3 bits (70), Expect = 0.37
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +2
Query: 89 ERNETNKRDSCDGGVPGARHAARLVAPLRRGPRLHGAAVDRRLCTEGHTAGRGGRSVAAK 268
E E KRDSC+ R + L P G + D +LC G+ G G S+ AK
Sbjct: 171 EETECKKRDSCEEIHSVGRPSMFLSLPEDVGLTIESEMADEKLC--GNMDGLGSLSIEAK 228
Query: 269 RL 274
+L
Sbjct: 229 KL 230
>04_04_1563 -
34445832-34445891,34445981-34446097,34447363-34447450,
34447626-34447675,34447848-34448285
Length = 250
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 173 RRGP---RLHGAAVDRRLCTEGHTAGRGGRSVAA 265
RR P R GAAV+ R+CT A +GGR V A
Sbjct: 19 RRSPTTARASGAAVEIRVCTNRTCARQGGREVLA 52
>09_04_0720 -
19720844-19720975,19721582-19721809,19722108-19722290,
19722361-19722476,19722684-19722836,19722977-19723120,
19723257-19723380,19723548-19724479,19725245-19725422
Length = 729
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = +1
Query: 139 CAACCPPRGAATPWPAAARCSSGSETLHRGSHSWPRWQISRC 264
C +C P C G H+ SW RWQ RC
Sbjct: 185 CCSCSPENNNKNNDGGGGGCDGGE---HQKGKSWRRWQYRRC 223
>04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158
Length = 974
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = -3
Query: 195 PCSRGPRRSGATRRAACRAPG-TPP 124
P S GPR S + RRAAC+AP TPP
Sbjct: 454 PDSAGPR-SPSVRRAACQAPDPTPP 477
>12_01_0461 +
3618414-3618782,3619664-3619794,3620177-3620294,
3620602-3620654,3620758-3620807,3620912-3621010,
3621511-3621620,3621773-3621900,3622071-3622161,
3622610-3622693,3622863-3623083,3623449-3623527,
3624134-3624283,3624326-3624470,3624604-3624983,
3625096-3625197
Length = 769
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 103 KQTRLVRWWGPWCAACCPPRG-AATPWPAAARCSSGSETLHRGSHSWPRWQISRC 264
++ RL+R W P + P R ++ PA A SSG + S P+ Q RC
Sbjct: 25 RRRRLLRGWPPPLVSAIPSRAFGSSGLPARACASSGFSGMAAVSPPTPQQQQQRC 79
>01_06_0870 +
32601939-32602261,32602368-32602563,32603962-32604093,
32604181-32604303
Length = 257
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/57 (40%), Positives = 27/57 (47%)
Frame = +2
Query: 131 VPGARHAARLVAPLRRGPRLHGAAVDRRLCTEGHTAGRGGRSVAAKRLQNVPVWLGG 301
+PGAR LV RR G A+ RR C EG T G+G A+R LGG
Sbjct: 2 LPGARS---LVVLRRRA----GLALLRRGCGEGGTCGKGEAPANARRAAATLAGLGG 51
>01_05_0329 -
21037980-21038378,21038517-21038737,21038827-21038905,
21039002-21039071,21039144-21039255,21039359-21039398,
21039482-21039676,21039925-21040044,21040684-21041106,
21042386-21042928
Length = 733
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = +3
Query: 51 VLHDLRNVMLICQSEMKQTNETRAMVGSLVRGMLPASWRRYAVARGCTVQQWIGDFAQRV 230
VL L +L +EMK+TN L A + YA+ V+ W+ D ++
Sbjct: 380 VLEKLPVKVLPEMNEMKETNHAHLQAEFLAPDDCTAGDQNYALPIKVEVESWVADIRKKE 439
Query: 231 TQLAEVAD 254
+ + D
Sbjct: 440 AAMQTITD 447
>07_03_1587 +
27937243-27937251,27937813-27937872,27938007-27938008,
27938208-27939012
Length = 291
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 125 GGVPGARHAARLVAPLRRGPRLHGAAV 205
G + G +HAAR++AP RRG + A+V
Sbjct: 139 GVLAGVKHAARVMAPRRRGSIICVASV 165
>04_04_1497 -
33996990-33997178,33997915-33998127,33998320-33998553,
33998622-33998818,33999327-33999491,33999758-33999857,
34000213-34000428
Length = 437
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 253 SATSASCVTLCAKSPIHCCTVQPRATA*RRH 161
+ +S++ + PIH C+ PR +A RRH
Sbjct: 5 ACSSSASALVRLTGPIHLCSAPPRGSARRRH 35
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 115 LVRWWGPWCAACCPPRGAATPWPAAARCS 201
LVR GP PPRG+A A+ RCS
Sbjct: 13 LVRLTGPIHLCSAPPRGSARRRHASVRCS 41
>10_05_0020 - 8094412-8094653,8094692-8095017,8095632-8095798
Length = 244
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +1
Query: 151 CPPRGAATPWPAAARCSSGSETLHRGSHSWPR 246
CPP A AA S GS H GSH R
Sbjct: 37 CPPLEDAATVAAACALSLGSRAAHPGSHQLDR 68
>04_03_0320 - 14316934-14318550
Length = 538
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 174 AVARGCTVQQWIGDFAQRVTQLAEVADQ 257
AV GC+ W D A V QLAE A Q
Sbjct: 499 AVLPGCSWAGWFDDMAAMVAQLAEWAAQ 526
>02_05_0825 - 32042128-32042238,32042905-32043246,32043548-32043727
Length = 210
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +3
Query: 234 QLAEVADQSLLRGCRM---SQCGSVDC*TLKLISQL 332
QLAEVA Q++LR C QCG C + +S L
Sbjct: 167 QLAEVAVQNVLRKCEQLLHQQCGLSSCCNQRHLSHL 202
>02_02_0301 + 8759230-8759543,8760018-8760030
Length = 108
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +2
Query: 194 GAAVDRRLCTEGHTAGRGGRSVAAKRLQNV-PVWLGGLLNPEAYITATRQCVAQ 352
GAAVD R GH+ RG R A L + G + P+ C AQ
Sbjct: 38 GAAVDARALLRGHSGWRGLRVAARMMLDSSDSAAAAGQMQPQQRAAGAVACSAQ 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,081,136
Number of Sequences: 37544
Number of extensions: 467057
Number of successful extensions: 1913
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1912
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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