Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30974
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.38 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.88 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 288 TGTFCNLLAATDLPPRPAV*PSVQSLRSTAAPCSR 184
           TGT+  LL    LPPR A    VQ  + +A P  +
Sbjct: 477 TGTYPTLLPQWCLPPREAPLVGVQPHQDSATPADQ 511


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 21/62 (33%), Positives = 26/62 (41%)
 Frame = -3

Query: 306 SSPPSHTGTFCNLLAATDLPPRPAV*PSVQSLRSTAAPCSRGPRRSGATRRAACRAPGTP 127
           SS  S      NLL    L P  ++ PS+ S  S           S A  R+AC +PG  
Sbjct: 255 SSTSSGGNEDANLLLKARLNPNSSLQPSLASHHS---------HLSSALGRSACHSPGVY 305

Query: 126 PS 121
           PS
Sbjct: 306 PS 307


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 663 LLSGRDGQPHREQQLRAGAVQVHGESQRVR 574
           L +G    PH+ QQ    AVQV  ++Q V+
Sbjct: 13  LRNGGVEHPHQHQQHYGAAVQVPQQTQSVQ 42


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -3

Query: 246 PRPAV*PSVQSLRSTAAPCSRGPRRSGATRRAACR 142
           P P+  P++   + +   CS  PR++  +R+ + R
Sbjct: 374 PEPSKNPAMGHWQMSCVACSPPPRQTPPSRKESGR 408


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -3

Query: 294 SHTGTFCNLLAATDLPPRPAV*PSVQSLRSTAAPCSRGP 178
           S T  F + LAA DL    AV P    L+ T      GP
Sbjct: 70  SVTNCFVSSLAAADLLVGLAVMPPAVLLQLTGGTWELGP 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,783
Number of Sequences: 438
Number of extensions: 4350
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)