Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30973
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   1.8  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    26   3.1  
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    25   4.2  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   5.5  
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    25   7.3  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 153 FNCERLCNSLKRVKKFSNWREPIPEAYFPKLDSLLRHVDGPHVSPV 290
           F C  LC S K+     +W   +  A+F   D  LR+   PH+S V
Sbjct: 327 FCCTLLCLSPKQFF-LKHWISSLDAAFFRVKDRRLRNTGLPHLSRV 371


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 286 RYAMAGPESCRRSLFVTIDEMERWRRNVEEAIATGTVRLPTGQTRLLTS 432
           R A  G  + + +    ID + +W R+V E +  GT+ L  G T  L+S
Sbjct: 219 RLAPLGVVNTQLAPTAQIDALLQWTRSVAECLKNGTL-LKIGNTDSLSS 266


>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/50 (20%), Positives = 26/50 (52%)
 Frame = +3

Query: 87  SIVAKDRRGELFFYMHQQVIARFNCERLCNSLKRVKKFSNWREPIPEAYF 236
           +I  K++R +LF  ++++ +   + + LC ++  + +    +  IP   F
Sbjct: 80  NIAYKEKRQQLFSVLYEETVGYVSMDTLCIAISLLDRCFTVKPTIPTTSF 129


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 245 KLREVSLRNWLPPVAEFFNS 186
           K+ E+  RNW PPV E+  S
Sbjct: 446 KIIEIHTRNWDPPVPEWLCS 465


>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 416 VCPVGNLTVPVAIASSTFLLQRSISSMVTNRLR 318
           VC + + T P  +  S F   R +   +T+RLR
Sbjct: 451 VCDLIDTTTPYGLTGSIFAQDRVVVRKLTDRLR 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,985,088
Number of Sequences: 5004
Number of extensions: 39949
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)