Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30973
         (456 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1356 - 29536027-29537379                                         30   0.77 
03_01_0608 + 4471738-4472115                                           28   3.1  
10_08_0642 - 19525774-19526554,19526657-19527075                       28   4.1  
11_05_0100 - 19056465-19056470,19057043-19057276,19058391-190585...    27   5.4  
06_01_0633 - 4616331-4616443,4616576-4616689,4616912-4617570,461...    27   9.5  
05_03_0624 - 16319364-16320581                                         27   9.5  
05_03_0599 + 16026042-16027259                                         27   9.5  

>06_03_1356 - 29536027-29537379
          Length = 450

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 306 RSCHCIPD*RGGHPRDEANCQ-A*GSKPPELAPS 208
           R CHC+ D  GG   ++A C+ A G+  P ++PS
Sbjct: 165 RFCHCVVDAPGGMQFEKAVCELARGAAAPSVSPS 198


>03_01_0608 + 4471738-4472115
          Length = 125

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 153 FNCERLCNSLKRVKKFSNW-REPIPE 227
           F CER+C S + +KK   + ++PIPE
Sbjct: 48  FVCERVCTSKRMLKKVGAFSKDPIPE 73


>10_08_0642 - 19525774-19526554,19526657-19527075
          Length = 399

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 284 SGMQWQDLNRAAEVYL*PLTKWNAGEETWK 373
           +G+Q Q L   AEVY  P  +W A  E W+
Sbjct: 196 AGVQVQWLPSFAEVYKPPAAEWTAPAERWQ 225


>11_05_0100 -
           19056465-19056470,19057043-19057276,19058391-19058546,
           19059639-19059763,19059912-19059983,19060080-19060184,
           19060691-19060745,19061576-19061656,19062806-19062869,
           19064715-19064782,19064947-19065033,19066121-19066285,
           19066310-19066429,19066485-19066607,19066738-19067019,
           19067936-19068075,19068234-19068335,19068802-19068874,
           19069061-19069171
          Length = 722

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 262 TWMAPTSVRYAMAGPESCRRSLFVTIDEMER-WRRNVEEAIATG 390
           T +AP  + +       CRR L   ++E E+ W R   E I  G
Sbjct: 602 TLLAPAEIEWVNTYHSDCRRILQPYLNEQEKEWLRKATEPITLG 645


>06_01_0633 -
           4616331-4616443,4616576-4616689,4616912-4617570,
           4617593-4617672
          Length = 321

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 201 SNWREPIPEAYFPKLDSLLRHVDGPHV 281
           ++W+  I + +FP   + L  VDG HV
Sbjct: 37  THWKISIDQQFFPYFQNCLGAVDGTHV 63


>05_03_0624 - 16319364-16320581
          Length = 405

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 264 VDGPHVSPVCNGRT*IVPPKSICDH*R 344
           V  P  SP C+  T + PPK + DH R
Sbjct: 119 VPSPAPSPRCSTSTPLSPPKLLADHGR 145


>05_03_0599 + 16026042-16027259
          Length = 405

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 264 VDGPHVSPVCNGRT*IVPPKSICDH*R 344
           V  P  SP C+  T + PPK + DH R
Sbjct: 119 VPSPAPSPRCSTSTPLSPPKLLADHGR 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,824,595
Number of Sequences: 37544
Number of extensions: 299676
Number of successful extensions: 801
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)