Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30972
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 32 0.068
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 30 0.36
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 0.48
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 29 0.64
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.84
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 1.1
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 28 1.5
SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo... 28 1.5
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 27 1.9
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 1.9
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 27 1.9
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.6
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 27 2.6
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc... 27 3.4
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 27 3.4
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 26 5.9
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 5.9
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 26 5.9
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 25 7.9
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 7.9
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 32.3 bits (70), Expect = 0.068
Identities = 22/97 (22%), Positives = 47/97 (48%)
Frame = +2
Query: 206 TPPKSRRQIQDDHRRHEGVLSRLQQNVTTEEQRWAQQLADKQRELDELRQRTVSQMQKKI 385
T + R IQ + V ++L+ E+ A++LA+++ L E ++R Q+Q++
Sbjct: 849 TKRQLERAIQAQIEYEKSVAAKLEDARIQREKEKARRLAEEEALLKEKQERE-RQLQEER 907
Query: 386 DSLQEELAQAKSARHNHTFADAERLAEERLMAGLSDK 496
+QEE+ + + ++ + D +E +G K
Sbjct: 908 QKMQEEVLEWRKSQQKASEDDMSLSDDEEKQSGKKKK 944
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 29.9 bits (64), Expect = 0.36
Identities = 20/68 (29%), Positives = 37/68 (54%)
Frame = +2
Query: 179 TQGAGRSERTPPKSRRQIQDDHRRHEGVLSRLQQNVTTEEQRWAQQLADKQRELDELRQR 358
TQ GRS + + +++ + RR L++ ++ T +E + ++DK+REL EL
Sbjct: 151 TQSNGRSYAEVMR-QVELEKEERRVHMELNQRRREGTLKEVEEEESISDKKREL-ELNNT 208
Query: 359 TVSQMQKK 382
+SQ K+
Sbjct: 209 EISQKPKR 216
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.5 bits (63), Expect = 0.48
Identities = 24/97 (24%), Positives = 49/97 (50%)
Frame = +2
Query: 215 KSRRQIQDDHRRHEGVLSRLQQNVTTEEQRWAQQLADKQRELDELRQRTVSQMQKKIDSL 394
+++RQ + +R E L R Q+ E +R ++ KQ+E R++ + + Q++ D
Sbjct: 630 EAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKE----REKKLKKQQQEAD-- 683
Query: 395 QEELAQAKSARHNHTFADAERLAEERLMAGLSDKHTD 505
+E++A+ + R + +R+ EER DK +
Sbjct: 684 REKMAREQRLREE----EEKRILEERKRREKLDKEEE 716
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 29.1 bits (62), Expect = 0.64
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 239 DHRRHEGVLSRLQQNVTTEEQRWAQQLADKQRELDELRQRTVSQMQKK 382
+H+ H + Q T E R Q++ D +ELDE R++ + ++KK
Sbjct: 275 NHQFHSRDSQPITQRHTDIESR-LQKMQDNAKELDESRRKKIELLEKK 321
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.7 bits (61), Expect = 0.84
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Frame = +2
Query: 239 DHRRHEGVLSRLQQNVTTEEQR-WAQQLADKQRELD--ELRQRTVSQMQKKIDSLQEELA 409
D R H+ ++ +LQ N+T +Q Q+ Q E+ EL++R + M+++ ++LQ +L
Sbjct: 872 DLREHQTLVLQLQSNITELKQDITLQRTVRNQLEIQTTELKER-LKFMEERQENLQSKLI 930
Query: 410 QA-KSARHNHTFADAERLAEE 469
A K N + E ++ E
Sbjct: 931 AANKDTTQNPDNVEVEAISIE 951
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 1.1
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Frame = +2
Query: 245 RRHEGVLSRLQQ--NVTTEEQRWAQQLADKQRELDELRQRTVSQMQKKID---SLQEELA 409
R E L R +Q + +T E + A K + EL + Q I+ SL+E+ A
Sbjct: 120 REAEEELQRARQYNDRSTSEALELEARAKKAAQDAELASERAREAQSSIERSASLREKQA 179
Query: 410 QAKSARHNHTFADAERLAEERLMAGLSDKHTDIATDRYSSAWKINSTWKQE 562
+ ++ R +AE + RL +D D+A + A K + WK E
Sbjct: 180 REEAERAATALREAE--LKHRLAQANAD--VDVANSKLDIALKNEAAWKAE 226
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +2
Query: 524 SSAWKINSTWKQEACTKRCRVIIPIRRATARVGSMRRAPILTVISINNYKF 676
SS+ I S+ + E+ ++ +R+++ ++ P+ TV+S+ +YKF
Sbjct: 995 SSSSTIPSSTRSESNSESASTSSASKRSSSSTSLVQSNPVKTVVSLESYKF 1045
>SPAC9E9.14 |vps24||vacuolar sorting protein
Vps24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 171 DDRLKELADQNEHLQSLVDKYKTI 242
D+ L +LAD++E +Q ++ KY I
Sbjct: 155 DEELMDLADEDEEVQEILTKYNVI 178
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +2
Query: 506 IATDRYSSAWKINSTWKQEACTKRCRVIIPIRRATARVGSMRRAPILTVISINN 667
I ++ S+ + N E T C + IP + AT VGS IS+ N
Sbjct: 307 IRCNKKSNCYNWNGIAALETYTTECHIQIPDKEATITVGSNFEVDHFLKISVGN 360
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +2
Query: 263 LSRLQQNVTTEEQRWAQQLADKQRELDELRQRTVSQMQKKIDSLQEEL 406
L+ LQ N+ E+ + LAD ++ E+ +++ ++ + S+QEEL
Sbjct: 439 LASLQTNLKAFEKLICRGLADSNSQVREVYRKSFWKLSEYFPSVQEEL 486
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/68 (23%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +2
Query: 221 RRQIQDDHRRHEGVLSRLQQNVTTEEQRWA--QQLADKQRELDELRQRTVSQMQKKIDSL 394
+++I+D + +L++ + T +Q + D+Q E+DELR+R ++ +++I +
Sbjct: 139 QKRIEDLLYERQNHQQQLEEVLATVDQLQSLVTNFNDQQDEVDELRER-ITLKEERIQQM 197
Query: 395 QEELAQAK 418
+ E +Q +
Sbjct: 198 RNEASQRR 205
>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 27.1 bits (57), Expect = 2.6
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
Frame = +2
Query: 203 RTPPKSRRQIQDDHRRHEGVLSRLQQNVTTEEQRWAQQLADKQRELDELRQRTVSQMQKK 382
+T P + R I + RH L +L++ +E++ ++QR + +T Q K
Sbjct: 55 KTYPAALRYIFALNSRHPEKLQKLRKMKAMQERQERNWSLERQRLVQHFESKTKLQEILK 114
Query: 383 IDSLQEELAQAKSARHNHTFAD-AERLAEERLMAGLSDKHTDIATDRY 523
S +L Q + ++ T D A+ L + R + ++ + Y
Sbjct: 115 PLSSDPKLKQPSNCLNDQTNNDSAQTLDDNRALQEFDEQVVQLTNRMY 162
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 27.1 bits (57), Expect = 2.6
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Frame = +2
Query: 140 AGDSGHGAAL*RPTQGAGRSERTP--PKSRRQIQDDHRRHEGVLSRLQQNVTTEEQRWAQ 313
A D+ A P + R P P S + ++R E S +++ +E A
Sbjct: 94 AVDTSEAVASMTPNKRKARDPAQPKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAM 153
Query: 314 QLADKQRELDELRQRTVSQMQKKI-DSLQEELAQAKSARHNHTFADAERLAEE 469
+K L E ++T + K+ ++ +EE+A +++ N + AD+ AEE
Sbjct: 154 H--EKWGSLSEDDRKTYEEEASKLREAYEEEMAAYNASKENASVADSRVTAEE 204
>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 164
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +2
Query: 278 QNVTTEEQRWAQQLADKQRELDELRQRTVSQMQKKIDSLQEELAQAK 418
+NV E++ QQL +Q + R+ + + +I L+ E+ + K
Sbjct: 113 ENVLLEQKEQLQQLEKRQTDQVSARENILQRETSEIQRLEREIEKVK 159
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 138 KQATVVTAPPSDDRLKELADQNEHLQSLVDKYKT--IIDDT 254
K VV P ++ K + ++ +QSL+ K KT I+D+T
Sbjct: 917 KSDAVVYIHPDEEHSKLITSESASIQSLIKKCKTLSIVDNT 957
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 25.8 bits (54), Expect = 5.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 587 SLDIALYKLPVSKCYLFSKPSCN 519
S+ A+++ PVS+CYL +C+
Sbjct: 174 SIQDAMHRFPVSECYLACLKACS 196
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 203 RTPPKSRRQIQDDHRRHEGVLSRLQQNVTTEEQRWAQQLADKQRELDELRQ 355
R+PP +RR+ +DD+RR + +E+R+A + ++ DE R+
Sbjct: 187 RSPP-ARRRYRDDYRRGGDYRRDAYRPGRDDERRYAPRGEYRRNNRDEYRR 236
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = -2
Query: 269 GLTRPRVVYDRLVFVDE--TLEVFV 201
G+ RP V+Y +++ VDE TLE +V
Sbjct: 119 GIRRPEVLYSKVIEVDERVTLEDYV 143
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 129 ETEKQATVVTAPPSDDR-LKELADQNEHLQSLVDKYKT 239
E EK+ T SD+ L ++ ++NE +LVD+ KT
Sbjct: 532 EEEKEHTKGIKFSSDEESLSDMEEENETFDALVDRRKT 569
>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 7.9
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2
Query: 344 ELRQRTVSQMQKKIDSLQEELAQAKSARHNHTFADAERLAEERLMAGLSDKHTDIATDRY 523
+++ ++ KKID L EE+ Q SA + AER E + + D+ D+ R
Sbjct: 238 DIKNMDAAEKLKKIDLLLEEILQLDSA-----YDAAERRMIESGWSSV-DEIRDVHNKRL 291
Query: 524 SSAWKINSTWKQEAC-TKRC 580
AW S WKQ+ K+C
Sbjct: 292 -DAW---SEWKQKLLPLKKC 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,236
Number of Sequences: 5004
Number of extensions: 38473
Number of successful extensions: 154
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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