Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30965
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    34   0.018
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.69 
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    28   1.6  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     27   3.7  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    27   3.7  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    26   4.9  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    26   4.9  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   6.4  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    26   6.4  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    25   8.5  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   8.5  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +1

Query: 49  CYQNLESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKKFK 174
           CY     +Y E   +K     NDD   +  FD AK  LK FK
Sbjct: 522 CYALASDQYPELPVIKAYQGCNDDWNIMDHFDFAKPELKMFK 563


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 160 ILTLLYQTLTMFENHH*LHLVFSLFDFPSIYFPSFDNNIANHLLTYSSKYF 8
           I T ++    +FE HH L  + ++FD+     P     + N +L+ S K F
Sbjct: 286 IYTTVWLLQRLFEAHHSLDPLLTIFDYYLSVSPKDITRLTNAILSLSMKQF 336


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 297 EQISNKIKGQILHPNLKESTIKDCKT--VLTVYISVNSVCWTLINKNDYEVVEWQYYG 464
           +++  ++ G ++H NL     K  K+  + +V +S +   W + N  D  +V W  YG
Sbjct: 317 KKLRKRLNGDVVH-NLDVPHDKSYKSNYLFSVVLSPHQASWNIYNSFDNSMVLWCPYG 373


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 22/93 (23%), Positives = 39/93 (41%)
 Frame = +3

Query: 207 PI*FTFNRRFHRQDS*KLCDSILNGPTEEVEQISNKIKGQILHPNLKESTIKDCKTVLTV 386
           P   T +  + R D   + D+IL    +E         G I H NL+E  +     +  V
Sbjct: 110 PFQLTLDYDYWRADD--ILDAILPPGEKEDHPSGFTAVGHIAHMNLREEWLPYKYIIGKV 167

Query: 387 YISVNSVCWTLINKNDYEVVEWQYYGIDYPEGK 485
            +  N    T++NK D    +++ + ++   GK
Sbjct: 168 ILDKNPSIETVVNKTDTIDTKFRTFQMEVLAGK 200


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = +1

Query: 88  KVKILNVINDDSQTLSRFDIAKSRLKKFKQWKTS 189
           K  + ++INDDS+ +++  ++K  + + K+ +TS
Sbjct: 196 KGTVTSIINDDSRNINKKTLSKQPVSEHKEKQTS 229


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
            Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 10   NILNCRSISGSRCCYQNLESKYSE-SQKVKILNVINDDSQTLSR 138
            NIL  R +S     +  LE KY+E  +K+ +L  + D  + LS+
Sbjct: 872  NILESRLLSNPLHNFSELEEKYAEYLRKLALLEEVKDLKKKLSK 915


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = +1

Query: 64  ESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKKFKQWKTSNGQVKTLSDLPLIEGFTD 243
           +S  SES  +  L+V  +  +T+S F +A+      K WKTSNG +    D+   E F  
Sbjct: 63  DSGVSESWVLDFLSVTGE--KTISEF-LAQ------KIWKTSNGDLNVAVDMYFDESFNI 113

Query: 244 KTA 252
           K +
Sbjct: 114 KNS 116


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 13  ILNCRSISGSRCCYQNLESKYSESQKVKILNVIN 114
           +L C  I G   C     S YS  QK+ IL+ I+
Sbjct: 582 LLTCLDICGPVICTNLFVSDYSMRQKILILSCIS 615


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = +3

Query: 402 SVCWTLINKNDYEVVEWQYYGIDYPEGKKIQITDILI 512
           S+  T+++  D+E    +   ID PEG++I++ +++I
Sbjct: 415 SIYLTIMSSVDFEECCHKLLKIDLPEGQEIELCNMVI 451


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 49  CYQNLESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKKF 171
           CYQN  + YS+ Q ++    + D    L  +D+  S  K F
Sbjct: 697 CYQNANTTYSKFQSLECQTNLED---MLKHYDVEISPAKSF 734


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +1

Query: 10  NILNCRSISGSRCCYQNLESKYSESQKVKILNVINDDSQTLSRFDIAKSR 159
           N  NC +IS     +    SK++ S    I N++  + + LS     +S+
Sbjct: 730 NTFNCPAISYFETSFDECFSKFASSDNYIIGNLLKTNQEDLSNLPTFRSQ 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,317
Number of Sequences: 5004
Number of extensions: 57623
Number of successful extensions: 152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)