Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30965
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0304 + 2177044-2177046,2177173-2177235,2177323-2177460,217...    29   2.9  
08_02_1237 + 25475219-25475916,25476127-25476320,25476407-254773...    28   8.9  

>07_01_0304 +
           2177044-2177046,2177173-2177235,2177323-2177460,
           2177886-2178778,2178935-2179005,2179132-2179234,
           2180017-2180092,2180870-2180977
          Length = 484

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 515 QYQYICDLNLLSFGVINTIILPLHNFI 435
           +YQ I D N LS  + N II+ +HNFI
Sbjct: 92  EYQLIVDFNALSVDIENEIII-IHNFI 117


>08_02_1237 +
           25475219-25475916,25476127-25476320,25476407-25477302,
           25477416-25477490,25477582-25477689,25477780-25477897,
           25478007-25478142,25478228-25478372,25478460-25479080,
           25479166-25479597
          Length = 1140

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = +3

Query: 288 EEVEQISNKIKGQILH-----PNLKESTIKDCKTVLTVYISVNSVCWTLINKNDYEVVEW 452
           +E   I   ++G+I++     PN  E  I+    VL++Y+S+ ++ W  + +N  + V  
Sbjct: 609 KEPSTIPGNLRGEIVNWLKHSPNEMEGYIRPGCLVLSMYLSMPAIAWDELEENLLQRVNT 668

Query: 453 QYYGID 470
              G D
Sbjct: 669 LVQGSD 674


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,775,203
Number of Sequences: 37544
Number of extensions: 306371
Number of successful extensions: 880
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)