Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30965
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016685-3|AAG24145.2|  422|Caenorhabditis elegans Hypothetical ...    32   0.37 
AL021492-11|CAA16378.1|  684|Caenorhabditis elegans Hypothetical...    30   2.0  
U97014-3|AAB52427.3|  856|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AF016685-3|AAG24145.2|  422|Caenorhabditis elegans Hypothetical
           protein F59E11.11 protein.
          Length = 422

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 255 KLCDSILNGPTEEVEQISNKIKGQILHPNLKESTIKDCKTVLTVYISVNSVCWTLINK 428
           KL   +L G  EEV Q    +    LH + K+  +      LT  +S+N+   +L+NK
Sbjct: 337 KLTGKMLGGDVEEVTQKLQDVLANDLHEHYKDQEVSRYAHRLTKLLSINNDWQSLLNK 394


>AL021492-11|CAA16378.1|  684|Caenorhabditis elegans Hypothetical
           protein Y45F10D.3a protein.
          Length = 684

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 578 W*LQLSSHKCQRPVTAALYAMQYQYICDLNLL 483
           W  ++SSH+C +     L+A+Q+  IC  NLL
Sbjct: 25  WKTRVSSHQCNKSPIFGLFAIQFSNICS-NLL 55


>U97014-3|AAB52427.3|  856|Caenorhabditis elegans Hypothetical
           protein T05E8.3 protein.
          Length = 856

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
 Frame = +1

Query: 19  NCRSISGSRCCYQNLESKYSES----QKVKILNVINDDSQTLSR-FDIAKSRLKKFKQWK 183
           N R   G    +QNLE+   ++    +K K +N    + + LS  F I    LKK K+ +
Sbjct: 46  NSRQTGGQEQKFQNLEALKKKTMLLKKKKKQMNNFQKEEELLSSTFRITNGILKKEKKIE 105

Query: 184 TSNGQVKTLSDLPLIEGFTDKTAKNS 261
            +    +T   LP     T   +KN+
Sbjct: 106 VTTISTQTPKKLPKTPISTPSNSKNA 131


>U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical
           protein F59A6.3 protein.
          Length = 786

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 58  NLESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKKFKQWKTSNGQVKTLSD 216
           N E+  S+     +     DD+ T+S    + S   +FK  +T+ G   T+S+
Sbjct: 240 NSETTESDGTTTTVFTTTKDDTSTVSGDSNSGSSTSEFKNTETTTGPGSTVSE 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,728,687
Number of Sequences: 27780
Number of extensions: 313125
Number of successful extensions: 869
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)