Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30964
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 177 1e-45
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 95 7e-21
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 95 9e-21
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 92 6e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 62 6e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 62 1e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 51 2e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 37 0.003
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.12
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 0.86
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.1
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 28 1.1
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.6
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 27 3.5
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 27 3.5
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 27 3.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.5
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 4.6
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 26 4.6
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 25 8.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 177 bits (432), Expect = 1e-45
Identities = 79/88 (89%), Positives = 82/88 (93%)
Frame = +1
Query: 244 GTEGSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 423
G + SYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 424 APLNPKANREKMTQIMFETFNTPAMYVA 507
APLNPK+NREKMTQI+FETFN PA YVA
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYVA 135
Score = 102 bits (244), Expect = 6e-23
Identities = 44/49 (89%), Positives = 48/49 (97%)
Frame = +2
Query: 107 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 253
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQK 50
Score = 99 bits (238), Expect = 3e-22
Identities = 46/48 (95%), Positives = 48/48 (100%)
Frame = +3
Query: 510 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 653
QAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRD
Sbjct: 137 QAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRD 184
Score = 33.9 bits (74), Expect = 0.023
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +2
Query: 653 LTDYLMKILTERGYSFT 703
LTDYLMKIL ERGY+F+
Sbjct: 185 LTDYLMKILMERGYTFS 201
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 95.5 bits (227), Expect = 7e-21
Identities = 38/82 (46%), Positives = 61/82 (74%)
Frame = +1
Query: 262 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 441
VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP
Sbjct: 54 VGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPV 113
Query: 442 ANREKMTQIMFETFNTPAMYVA 507
ANREKM + MFE + +YVA
Sbjct: 114 ANREKMCETMFERYGFGGVYVA 135
Score = 71.3 bits (167), Expect = 1e-13
Identities = 31/49 (63%), Positives = 40/49 (81%)
Frame = +3
Query: 510 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDS 656
QAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD+
Sbjct: 137 QAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDA 185
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 113 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 217
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 95.1 bits (226), Expect = 9e-21
Identities = 41/87 (47%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Frame = +1
Query: 259 YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLN 435
+VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL
Sbjct: 57 FVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLA 116
Query: 436 PKANREKMTQIMFETFNTPAMYVATKP 516
N+EK+ + +ET N PA+ + +P
Sbjct: 117 NIRNKEKIAEYFYETLNVPALSFSLQP 143
Score = 69.3 bits (162), Expect = 5e-13
Identities = 29/48 (60%), Positives = 41/48 (85%)
Frame = +3
Query: 510 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 653
Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD
Sbjct: 142 QPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRD 189
Score = 56.4 bits (130), Expect = 4e-09
Identities = 24/43 (55%), Positives = 31/43 (72%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 253
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QK
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQK 54
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 92.3 bits (219), Expect = 6e-20
Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +1
Query: 259 YVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN 435
++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLN
Sbjct: 75 FIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLN 134
Query: 436 PKANREKMTQIMFETFNTPAMYVATK 513
P NRE +IMFE+FN +Y+A +
Sbjct: 135 PPENRENTAEIMFESFNCAGLYIAVQ 160
Score = 49.2 bits (112), Expect = 6e-07
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 8/56 (14%)
Frame = +3
Query: 510 QAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 653
QAVL+L AS + TG V+DSGDGV+H +P+ EGY + +I + LAGRD
Sbjct: 160 QAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRD 215
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 208
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 62.5 bits (145), Expect = 6e-11
Identities = 28/71 (39%), Positives = 40/71 (56%)
Frame = +1
Query: 295 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 474
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 475 ETFNTPAMYVA 507
E+ PA Y+A
Sbjct: 123 ESLRCPATYLA 133
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 110 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 211
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 510 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 614
Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 135 QETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 61.7 bits (143), Expect = 1e-10
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Frame = +1
Query: 229 RDGRYGTEGSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 405
RD + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 406 PVLLTEAPLNPKANREKMTQIMFETFNTPAM 498
P+ +TE NP R MT+++FE +N P++
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSV 147
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 220
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 29.1 bits (62), Expect = 0.65
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 543 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDSQT 662
++GIVL+ G+ SH +P+ G + R+ G S +
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSS 204
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 50.8 bits (116), Expect = 2e-07
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = +1
Query: 259 YVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 432
YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 52 YVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSW 111
Query: 433 NPKANREKMTQIMFETFNTPAMYV 504
NP++ R+++ + FE + PA Y+
Sbjct: 112 NPQSVRQQIMEAAFEQLHVPAFYL 135
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 110 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 211
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 36.7 bits (81), Expect = 0.003
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +1
Query: 310 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 477
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 478 TFNTPAMYVATKP 516
P +A +P
Sbjct: 172 ECQVPGFTIAYEP 184
Score = 31.1 bits (67), Expect = 0.16
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 507 HQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 650
++ ++ LYA G G+V+D G + PI +G + A +L L GR
Sbjct: 182 YEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGR 229
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +1
Query: 370 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTP 492
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 28.7 bits (61), Expect = 0.86
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -1
Query: 342 IPVSDDSVFDGVFEGQDTSFALCLISYIRAFCPIPTITP*WRGLPTIEGNTARGASSPAK 163
+P + +V +TSFAL S + PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 162 PALHIP 145
P L+ P
Sbjct: 123 PQLNSP 128
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 514 PCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 618
PC+ + PPV+C TP P C + H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 552 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 650
+V+DSG +H +P+ + A+ R+D+ G+
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGK 191
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 514 PCSRCTRPVVPPVSCWTPATVSPTPCPST 600
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -2
Query: 614 ECVSLVDGHGVGDTVAGVQHDTGGTTGRVQREHGLVATYMAGV 486
+C L+ G G G+ AG+ D G T REH L+A Y GV
Sbjct: 110 DCAILIIGGGTGEFEAGISKD--GQT----REHALLA-YTLGV 145
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -2
Query: 614 ECVSLVDGHGVGDTVAGVQHDTGGTTGRVQREHGLVATYMAGV 486
+C L+ G G G+ AG+ D G T REH L+A Y GV
Sbjct: 110 DCAVLIIGGGTGEFEAGISKD--GQT----REHALLA-YTLGV 145
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -2
Query: 614 ECVSLVDGHGVGDTVAGVQHDTGGTTGRVQREHGLVATYMAGV 486
+C L+ G G G+ AG+ D G T REH L+A Y GV
Sbjct: 110 DCAILIIGGGTGEFEAGISKD--GQT----REHALLA-YTLGV 145
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -1
Query: 240 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 106
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 535 PVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 627
P VP S P+ P P PS+ P PS
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 412 LLTEAPLNPKANREKMTQIMFETFN 486
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 246 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 154
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +3
Query: 465 DH-VRNIQHARHVRRHQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALP 617
DH V+N A ++R+++ + S +A G+ +G G+ H + + +GYA+P
Sbjct: 126 DHDVQNKSEA-NLRKYKNIES-FAKGQGIDFY-PAGRGIGHQIMVEQGYAMP 174
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = -2
Query: 644 GQVQTQDGVGECVSLVDGHGVGDTVAGVQHDTGGTTGR 531
GQ + G G G G GDTV GG GR
Sbjct: 122 GQNVQRGGRGGRYGSSGGRGAGDTVVSRSSGAGGARGR 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,166
Number of Sequences: 5004
Number of extensions: 68438
Number of successful extensions: 235
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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