Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30963
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    29   0.52 
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    27   2.8  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   2.8  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    26   4.9  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    26   4.9  
SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr 3|||M...    25   8.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.5  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 12/53 (22%), Positives = 29/53 (54%)
 Frame = +3

Query: 234 VRKICISQNFCLNRTSNDILFLIFMFSSINKQFRKNCISSKLLFKSYF*GSKV 392
           ++ I    NF   +TS+  ++++F  S+++   + NC S + +   +  G+K+
Sbjct: 617 LQNISSEYNFPGVKTSSSDVWILFTNSNVSVNLKSNCFSKEAIVSPFISGTKI 669


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 533 AWMYHVICVRTFQKFCLKIPHIIK 462
           AW +   C+ +   FC +IP IIK
Sbjct: 176 AWPFTAGCISSVLYFCARIPQIIK 199


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -1

Query: 673 NSRPKLAKSVQPFSSFSETNEQQFIF 596
           N+ P+L +S++P+ S  + + Q+FIF
Sbjct: 917 NAFPQLVRSLKPYISVLKQDHQEFIF 942


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +3

Query: 183 KQMFLFLIFMFSSINEQVRKICISQNFCLNRTSNDILFLIFMFSSINKQFRKNCI 347
           KQ  LF I M  S+N+++  I   Q+ CL    +     +     ++  + + C+
Sbjct: 123 KQASLFEIEMHKSLNDEINYILDDQDACLKPKPSVAQLFLSWLPKLSAVYGRYCV 177


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 682 FTNNSRPKLAKSVQPFSSFSETNEQ 608
           F NN++P +AKS    ++ SETN++
Sbjct: 680 FVNNTKPIVAKSPVTVTASSETNKK 704


>SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 201

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 685 TFTNNSRPKLAKSVQPFSSFSETNEQQFIFI-YIELSLFEFCTVKGVN 545
           TF N  RP L K  +      E +E+ + F+ +  +++ E  T+  VN
Sbjct: 147 TFVNPDRPNLKKRTEEDEENEEEDEEYYRFLQFYIMTVPENSTITDVN 194


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 165  YLFKTQKQMFLFLI--FMFSSINEQVRKICI 251
            Y+F   + +FLFL+  F F    E +RK+ I
Sbjct: 3783 YIFPEDRVLFLFLLMFFFFPKETESLRKLLI 3813


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,399
Number of Sequences: 5004
Number of extensions: 45913
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)