Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30963
         (739 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY050239-1|AAK84938.1|  440|Drosophila melanogaster SD02309p pro...    31   1.6  
AE014298-757|AAN09145.1|  440|Drosophila melanogaster CG3208-PB,...    31   1.6  
AE014298-756|AAF46047.1|  494|Drosophila melanogaster CG3208-PA,...    31   1.6  
AY069638-1|AAL39783.1|  231|Drosophila melanogaster LD40504p pro...    29   6.6  
AE014297-3707|AAF56390.1|  231|Drosophila melanogaster CG11820-P...    29   6.6  

>AY050239-1|AAK84938.1|  440|Drosophila melanogaster SD02309p
           protein.
          Length = 440

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 465 NYVWYF*AEFLKCPDAYYVIHPR*SYLLTPFTVQNSNRLNSIY 593
           N++W F A+ +KC    +V H + S L+ P  V +  R+  ++
Sbjct: 260 NFLWGFTAQGVKCEACGFVAHSKCSELVPPKCVPDLKRIRGVF 302


>AE014298-757|AAN09145.1|  440|Drosophila melanogaster CG3208-PB,
           isoform B protein.
          Length = 440

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 465 NYVWYF*AEFLKCPDAYYVIHPR*SYLLTPFTVQNSNRLNSIY 593
           N++W F A+ +KC    +V H + S L+ P  V +  R+  ++
Sbjct: 260 NFLWGFTAQGVKCEACGFVAHSKCSELVPPKCVPDLKRIRGVF 302


>AE014298-756|AAF46047.1|  494|Drosophila melanogaster CG3208-PA,
           isoform A protein.
          Length = 494

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 465 NYVWYF*AEFLKCPDAYYVIHPR*SYLLTPFTVQNSNRLNSIY 593
           N++W F A+ +KC    +V H + S L+ P  V +  R+  ++
Sbjct: 260 NFLWGFTAQGVKCEACGFVAHSKCSELVPPKCVPDLKRIRGVF 302


>AY069638-1|AAL39783.1|  231|Drosophila melanogaster LD40504p
           protein.
          Length = 231

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +3

Query: 501 CPDAYYVIHPR*SYLLTPFTVQNSNRLNSIYIKMNCCSLVSLKLENGWTDLANFGLELF 677
           CP+ Y + H    Y +  F     ++ +  Y+K     L    LE GW D+ + G + F
Sbjct: 87  CPNKYNIYHKCSLYCVNKFNSSPLSQPSHRYLKRYKRLLRKYPLEAGWKDVYDKGCKAF 145


>AE014297-3707|AAF56390.1|  231|Drosophila melanogaster CG11820-PA
           protein.
          Length = 231

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +3

Query: 501 CPDAYYVIHPR*SYLLTPFTVQNSNRLNSIYIKMNCCSLVSLKLENGWTDLANFGLELF 677
           CP+ Y + H    Y +  F     ++ +  Y+K     L    LE GW D+ + G + F
Sbjct: 87  CPNKYNIYHKCSLYCVNKFNSSPLSQPSHRYLKRYKRLLRKYPLEAGWKDVYDKGCKAF 145


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,437,437
Number of Sequences: 53049
Number of extensions: 411188
Number of successful extensions: 610
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3334818762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)