Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30963
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    24   1.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   1.7  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   3.0  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   3.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.9  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 367 NHTFKDLKSKVIYFDGQRLVYYNFN--E*TLIDSLIMCGIF 483
           N+ + +   K +Y +  R +YYN N  E   I   I CG F
Sbjct: 88  NYNYNNNNYKKLYCNNYRKLYYNINYIEQIPIPVPIYCGNF 128


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 117 SNQDNNNYDVNSINFMNAQY 58
           +N +NNNY+ N  N+ N  Y
Sbjct: 327 NNYNNNNYNNNYNNYNNNNY 346


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 367 NHTFKDLKSKVIYFDGQRLVYYNFN--E*TLIDSLIMCGIF 483
           N+ + +   K +Y +  + +YYN N  E   I   I CG F
Sbjct: 88  NYNYNNNNYKKLYCNNYKKLYYNINYIEQIPIPVPIYCGNF 128


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 367 NHTFKDLKSKVIYFDGQRLVYYNFN--E*TLIDSLIMCGIF 483
           N+ + +   K +Y +  + +YYN N  E   I   I CG F
Sbjct: 88  NYNYNNNNYKKLYCNNYKKLYYNINYIEQIPIPVPIYCGNF 128


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 207 FMFSSINEQVRKICISQNFCLNRTSNDILFLIFMFSSINKQF 332
           F +S +++ V+K       CL    N+I F I +    NK F
Sbjct: 500 FDYSEVSKWVQK----GQICLKEKENEIDFKIEVTEDCNKSF 537


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -1

Query: 739 FLYNSKHFHIYHLLNLLWTFTNNSRPKLAKSVQPFSSFSETN 614
           ++YN ++   Y      WT T+  R  L  S+  FS     N
Sbjct: 55  YIYNPRYPLPYSGSKCTWTITSYHRINLKCSLVEFSENKNCN 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,129
Number of Sequences: 438
Number of extensions: 3407
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)