Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30962
(755 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 33 0.058
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.95
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 26 5.0
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S... 26 6.7
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 26 6.7
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo... 26 6.7
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 6.7
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 25 8.8
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe... 25 8.8
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 32.7 bits (71), Expect = 0.058
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 57 QKFSKDATDDFVSKRNRASDYEEDEFKQTLIKKISDKFILLEKINKQHNREAFKAAYSMY 236
+K + + + + + E+DEF T KK+ + F +LEK N N EA K+
Sbjct: 18 RKLQRQRQTELLEEALDSESDEDDEFSSTSGKKVVNVFEILEKENNAINSEAEKSVSEEE 77
Query: 237 ED 242
+D
Sbjct: 78 QD 79
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 28.7 bits (61), Expect = 0.95
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = +3
Query: 60 KFSKDATDDFVSKRNRASDYEEDEFKQTLIKKISDKFILLEKINKQHNREAFKAAYSMYE 239
+FS++A +D S + E+ F + I+ KF +LEK+ + ++ +E
Sbjct: 230 RFSRNAGNDPTSTALEVRNIPEEHFNEENIRSFFSKFGVLEKVELNPTHHSCVLEFTSHE 289
Query: 240 DSMN 251
+ N
Sbjct: 290 AANN 293
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Frame = -3
Query: 498 IRSSILLWYSLRAFLSALRFL-------KSFVSTWSLYKESIFPESNCFWKSSFTLL 349
+ ++L W S+ +F ALR + KS S S + E+ P +W+ + +L
Sbjct: 563 LADAVLNWQSILSFFPALRIMRFLSITNKSLSSDNSAFTENDIPTLGAYWQCIWNIL 619
>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -3
Query: 564 VAPAFGQRDYPRHYQGPHGFGLIRSSILLWYSLRAFLSALRFLKSFVSTWSLYKESI 394
V A GQ D H G G + + Y++ + FL++ W L +E +
Sbjct: 432 VLRAIGQSDENAHSSIRFGIGRFTTEAEIDYAIENVSRQVSFLRNMSPLWDLVQEGV 488
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 6.7
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +3
Query: 9 LSKEYAVEDDEFL--LKHQKFS-KDATDDFVSKRNRASDYEEDEFKQTLIKKISDKFILL 179
L K+++ E + L +K K S +A DD S R + Y E + ++ L SD +L
Sbjct: 136 LYKKFSSEKETLLNSVKRAKVSYHEACDDLESARQKNDKYREQKTQRNLKLSESD---ML 192
Query: 180 EKINK 194
+K NK
Sbjct: 193 DKKNK 197
>SPAC9E9.10c |cbh1|cbh|centromere binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 514
Score = 25.8 bits (54), Expect = 6.7
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +3
Query: 30 EDDEFLLKHQKFSKDATDDFVSKRNRASDYEEDEFKQTLIKKISDKFILLEKINKQH 200
E+DE L HQ +F+ +R SD EED Q + + F +L K +QH
Sbjct: 434 EEDETKL-HQDAVDTVAAEFLEERRFESDEEEDVEPQISNVEAAMAFEVLIKYFEQH 489
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 58 RSLARTLPMILLAKGTERRTMK 123
R L T+ ILLAKGTE++ +K
Sbjct: 579 RLLESTIQNILLAKGTEKQKVK 600
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 73 TLPMILLAKGTERRTMKRMNL 135
+LPMI KGT RR + R+N+
Sbjct: 75 SLPMINFTKGTLRRLILRLNV 95
>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/58 (20%), Positives = 31/58 (53%)
Frame = +3
Query: 66 SKDATDDFVSKRNRASDYEEDEFKQTLIKKISDKFILLEKINKQHNREAFKAAYSMYE 239
S A ++V + + A+ +ED + +KK++ F L + ++ +EA+ + +++
Sbjct: 470 SVKAFTNWVGRYSEATKTQEDSSRLASMKKVNPHFTLRNWVLEEVIKEAYIGKFELFK 527
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,038
Number of Sequences: 5004
Number of extensions: 56234
Number of successful extensions: 187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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