Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30962
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ...    30   1.5  
AC006620-1|AAF39780.1|  754|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF067942-1|AAG45570.1|  488|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z74045-1|CAA98552.1|  535|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AF125463-4|AAD12862.1|  243|Caenorhabditis elegans Hypothetical ...    29   4.7  
AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math ...    28   6.2  
Z74038-5|CAA98494.1|  137|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
            protein Y79H2A.3a protein.
          Length = 2129

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 93   SKRNRASDYEEDEFKQTLIKKISDKFILLEKINKQHN 203
            ++  R  + E+ E+K  L +K+    ++LEK+  +HN
Sbjct: 1655 AEERRRMEREQKEYKDNLNRKVMGALVMLEKMLNEHN 1691


>AC006620-1|AAF39780.1|  754|Caenorhabditis elegans Hypothetical
           protein C51G7.3 protein.
          Length = 754

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 93  SKRNRASDYEEDEFKQTLIKKISDKFILLEKINKQHN 203
           ++  R  + E+ E+K  L +K+    ++LEK+  +HN
Sbjct: 280 AEERRRMEREQKEYKDNLNRKVMGALVMLEKMLNEHN 316


>AF067942-1|AAG45570.1|  488|Caenorhabditis elegans Hypothetical
           protein ZK6.8 protein.
          Length = 488

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 1/96 (1%)
 Frame = -1

Query: 449 LFGFSNRSFRRGLCTKNRFFLKAIAFGSHRLRFCADGNKTRQYPSCVCVCPSGRPCCSST 270
           + GF +     G C    F L+++    H        +    Y    C       C  S 
Sbjct: 26  MLGFGHLCIMTG-CDSQAFILESVINSIHERDPARINSHAGYYGQATCYLAFVFTCLVSP 84

Query: 269 SYR-SKLVHAVLVHAVSCFESFPVVLFIYFLEQYKF 165
           ++  +      L+ A +CF SFP+  F+Y  + Y F
Sbjct: 85  TFLYATSAKTTLIIAAACFTSFPLG-FLYTNQYYYF 119


>Z74045-1|CAA98552.1|  535|Caenorhabditis elegans Hypothetical
           protein T27F2.1 protein.
          Length = 535

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = +3

Query: 30  EDDEFLLKHQKFSKDATDDFVSKRN--RASDYEEDEFKQTLIKKISDKFIL-LEKINKQH 200
           EDDE +   ++  +D  DD   +RN  R+   + D+ ++   + IS+K +L L   N++ 
Sbjct: 347 EDDEQVKVREEIRRDRLDDIRKERNIARSRPDKADKLRKERERDISEKIVLGLPDTNQKR 406

Query: 201 NRE 209
             E
Sbjct: 407 TGE 409


>AF125463-4|AAD12862.1|  243|Caenorhabditis elegans Hypothetical
           protein Y49F6C.5 protein.
          Length = 243

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/73 (24%), Positives = 35/73 (47%)
 Frame = +3

Query: 9   LSKEYAVEDDEFLLKHQKFSKDATDDFVSKRNRASDYEEDEFKQTLIKKISDKFILLEKI 188
           + K+Y V+D  F+    K +K        K+ ++ D   +EF   ++    +KF +L+K 
Sbjct: 78  MKKDYLVDDSLFVKATVKITKMI--GIPRKKLKSFDESVEEFSDVILAVEDEKFYVLKKF 135

Query: 189 NKQHNREAFKAAY 227
              H+   FK+ +
Sbjct: 136 LASHS-SYFKSLF 147


>AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math
           domain containingprotein 3 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/66 (21%), Positives = 32/66 (48%)
 Frame = +3

Query: 6   LLSKEYAVEDDEFLLKHQKFSKDATDDFVSKRNRASDYEEDEFKQTLIKKISDKFILLEK 185
           +L+K+Y ++D   ++             + K+ R+ +  E+EF   ++    +KF +L+K
Sbjct: 109 MLAKDYIIDD--IIIAEATVKVTNMTGILKKKLRSFEKSEEEFSDVVLAVEDEKFHVLKK 166

Query: 186 INKQHN 203
               H+
Sbjct: 167 FLASHS 172


>Z74038-5|CAA98494.1|  137|Caenorhabditis elegans Hypothetical
           protein F58B4.4 protein.
          Length = 137

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +3

Query: 33  DDEFLLKHQKFSKDATDDFVSKRNRASDYEEDEFKQTLIKKISDKFILLEKI 188
           D E    + K  KDA DD+  K N    Y  D  KQ++I     KF +L +I
Sbjct: 51  DPEKNASNLKIVKDAVDDYSKKEN--IRYPSDNIKQSIIDH-GGKFAVLFEI 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,479,511
Number of Sequences: 27780
Number of extensions: 311073
Number of successful extensions: 992
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)