Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30961
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 43 4e-05
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 29 0.94
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 29 0.94
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 27 2.9
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 27 2.9
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 27 2.9
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 27 3.8
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 26 5.0
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.0
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph... 25 8.7
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 25 8.7
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 43.2 bits (97), Expect = 4e-05
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +3
Query: 525 HPQCFTCCKCGELLADLVYFYHKGEIYCARDLANVLEIPRCAGC 656
HPQCF C C + L + ++Y +G+ YC D PRC C
Sbjct: 279 HPQCFKCDTCSQNLEHVGFYYREGKFYCHLDYHEQFS-PRCKHC 321
Score = 29.9 bits (64), Expect = 0.40
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 522 WHPQCFTCCKCGELLADLVYFYHKGEIYC 608
+H QC+TC C LL D YF + C
Sbjct: 397 YHSQCWTCGACNALLGDEGYFMIENTPIC 425
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 28.7 bits (61), Expect = 0.94
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 383 LILHLAPPKQNSTGNCIMKEYLANDVISLCSRARSQLKLIE 505
LI H APP+ N + ++KE++A+ + + R +L++
Sbjct: 220 LIAHTAPPRLNGNFSALLKEFIASCLQDVPQRRLDSSELLK 260
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 28.7 bits (61), Expect = 0.94
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 467 DLLHRWQGTPSLYSFLLNSASAGLSV 390
D++ WQ P L+ FLL++ + GL +
Sbjct: 1486 DMVTEWQTRPELFVFLLSTRAGGLGI 1511
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/47 (27%), Positives = 29/47 (61%)
Frame = +1
Query: 289 DNVQIPDNAGYEVESQISDFDDNITPIIDQLADFTLSPAEAEFNRKL 429
D +++ D+ Y + + + +++ ID + D TL+P E+E+N+K+
Sbjct: 466 DTIELIDDIRYFLSKRFGIYHEDLC--IDGVVD-TLTPYESEYNQKM 509
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 14 GTIFAPNGEIWGWKHEPTQ 70
GT+FAP IW K EP +
Sbjct: 275 GTLFAPVNGIWSMKDEPVE 293
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 499 DRAVRKQFGILSASLVANAGSYWLTLSTFIIREKFTAPEIWP 624
D RK F + L GS+ L F++ KF A WP
Sbjct: 245 DYFARKAFLTRNKPLPEKTGSFQQFLDGFVVASKFFAQHPWP 286
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +1
Query: 229 LQYISWRNVPSNTDWNNSPIDNVQIPDNAGYEVESQISDFDDNITPIID 375
LQ + + NV + D S N P YE S S DD P+I+
Sbjct: 101 LQQLEFANVLTKADAFFSKSGNTVDPLRNNYETSSIFSGEDDTTAPLIE 149
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 5.0
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 519 IWHPQCFTCCKC 554
+WH CF C KC
Sbjct: 39 MWHKDCFCCTKC 50
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/52 (25%), Positives = 21/52 (40%)
Frame = +2
Query: 98 TKINPQYSTSMKPINQVEPQQTAPLRKYQRTQSEDELXXXXXXNYNTYPGAM 253
+ +N Y T+ + P + L KY T+ +YNTY G +
Sbjct: 173 SSLNSNYPTTWHFASHYYPTDSKQLVKYHPTEVHPSWTVEEPVHYNTYDGVV 224
>SPBC15D4.04 |gpt2|gpt,
alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
acetylglucosaminephosphotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 368 SLINLLILHLAPPKQNSTGNCIMKEYLANDVISLCSR 478
++IN ++ HL P +++ CIM L + L R
Sbjct: 397 TIINFVLYHLGPMREDHLTICIMGLQLLTGIFGLIIR 433
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 599 NLLRQRSGQCFRNSPMRRVRRVDLYT 676
+L R QCF P +R R VDL T
Sbjct: 1277 SLARDFIEQCFERDPEQRPRAVDLLT 1302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,289
Number of Sequences: 5004
Number of extensions: 65529
Number of successful extensions: 220
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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