Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30961
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 40 0.003
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216... 34 0.10
12_02_0546 - 20289272-20289470,20290054-20290223 33 0.32
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 32 0.42
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 32 0.42
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 31 0.98
10_08_0547 - 18682357-18682683,18682971-18683060,18683279-186833... 31 1.3
01_06_0747 - 31645136-31646521,31647870-31648142,31649080-316491... 31 1.3
02_05_0965 + 33136373-33136512,33136595-33136688,33136845-331368... 29 3.0
01_01_0615 - 4576554-4576560,4577808-4577824,4578776-4578911,457... 29 5.2
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +3
Query: 513 EAIWHPQCFTCCKCGELLADLVYFYHKGEIY---CARDLANVLEIPRCAGCDELIFT 674
+++WHPQCF C C + +++ + H+ + Y C +D + P+C C I T
Sbjct: 274 DSVWHPQCFRCFACNKPISEYEFAMHEDQPYHKSCYKDFFH----PKCDVCKNFIPT 326
>12_02_0498 +
19721038-19721178,19721376-19721472,19721576-19721619,
19722120-19722203,19722441-19722662
Length = 195
Score = 34.3 bits (75), Expect = 0.10
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 519 IWHPQCFTCCKCGELLADLVYFYHKGEIYC 608
++H CF CC G ++ Y H+G++YC
Sbjct: 129 MYHKSCFKCCHGGCTISPSNYIAHEGKLYC 158
>12_02_0546 - 20289272-20289470,20290054-20290223
Length = 122
Score = 32.7 bits (71), Expect = 0.32
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Frame = +2
Query: 68 QQEHSGTLCSTKINPQY-STSMKPINQVEPQQTAPLRKYQRTQSEDELXXXXXXNYNTYP 244
QQ G + T+ Q+ +N + QQ A L+ Y R Q +N YP
Sbjct: 7 QQTLEGHVIQTQEWQQHVDARFSNLNTMMQQQQADLQAYFRHQG-----------FNPYP 55
Query: 245 GAMFHLIQIGIIHRLTMFKYLITQGTRLNHKFL-ISTTISRPSL-INLLILHLAPPKQN 415
G F I IIH ++ T L+ K +S+TIS SL N L +H + PK+N
Sbjct: 56 GPCFLYFMIKIIH-----PHMHTYAKLLHWKIASMSSTISMSSLSTNKLSIHASFPKKN 109
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 32.3 bits (70), Expect = 0.42
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +3
Query: 516 AIWHPQCFTCCKCGELLADLVYFYHKGEIY---CARDLANVLEIPRCAGCDELIFT 674
A+WHP+CF C C + + D + Y C ++ + P+C C + I T
Sbjct: 576 AVWHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYKERFH----PKCDVCKQFIPT 627
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 32.3 bits (70), Expect = 0.42
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +3
Query: 522 WHPQCFTCCKCGELLADLVYFYHKGEIYCARDLANVLEIPRCAGCDELIFTRPYYR 689
WHPQCF C C + ++ + + + C + + + L+ T PY++
Sbjct: 134 WHPQCFRCSSCRHPIREMEVTFLQFSLECLKVFSGSDSLLYSVSQFTLLGTDPYHK 189
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 31.1 bits (67), Expect = 0.98
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 513 EAIWHPQCFTCCKCGELLAD 572
+++WHPQCF C C +++
Sbjct: 195 DSVWHPQCFRCFACDRPISE 214
>10_08_0547 -
18682357-18682683,18682971-18683060,18683279-18683301,
18683397-18683496,18683615-18683749
Length = 224
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 522 WHPQCFTCCKCGELLADLVYFYHKGEIYC 608
+H CF C G LL + Y H G +YC
Sbjct: 124 YHRTCFKCAHGGCLLTNASYASHNGILYC 152
>01_06_0747 -
31645136-31646521,31647870-31648142,31649080-31649148,
31649486-31649614
Length = 618
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 59 EPTQQEHSGTLCSTKINPQYSTSMKPINQVEPQQTAPLRKYQRTQS 196
+P QQ ++ + PQ S + P ++PQQ P++ R Q+
Sbjct: 384 QPVQQPNAQQFPPPPVQPQQSNTQLPPQAMQPQQHPPVQNQMRPQT 429
>02_05_0965 +
33136373-33136512,33136595-33136688,33136845-33136889,
33137007-33137174,33137247-33137331,33137531-33137637,
33137918-33137998,33138232-33138284,33138361-33138460,
33138911-33139054,33139268-33139364,33139528-33139611,
33139904-33140123,33140204-33140297,33140406-33140975,
33141348-33141449,33141564-33141656,33141834-33141836
Length = 759
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 560 LPAFATSEALRMPNCFLTARSALTATSPANIDLLHR-WQGTPSLYSFLLNSASAGL 396
LP F+ +E+ RMP+C L A P + L+R P +Y L+ GL
Sbjct: 43 LPGFSGAESYRMPSCGLAGGGEQPALPPDQLRSLYRELSEVPPVYDRLVLMVIDGL 98
>01_01_0615 -
4576554-4576560,4577808-4577824,4578776-4578911,
4579488-4579543,4580540-4580635,4580864-4580927,
4581022-4581077,4581170-4581249,4581778-4581842,
4581970-4582177,4582889-4583447
Length = 447
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -1
Query: 419 LNSASAGLSVKSAS*SMMGVILSSKSEICDSTSYPALSGI*TLSIGELFQS 267
L++A++ S + + G+++ K CDS PALS LS+G + QS
Sbjct: 205 LSTANSIFSALNRYSKLTGLVVCGKR--CDSVGIPALSSSLNLSLGRIKQS 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,687,711
Number of Sequences: 37544
Number of extensions: 394454
Number of successful extensions: 1102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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