Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30960
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm...    28   1.5  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    27   2.0  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    27   3.5  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   4.6  
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   6.1  

>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +2

Query: 446 TTLMPKRRNRNPNSSSKYETRSPKTNEPTSQREGLRDQNLTVG*KSRRNH 595
           T+++P   N +  +S  +  + PKTNEPT + E   D N  V  K++ N+
Sbjct: 156 TSMVP---NLSATASQLFSEQPPKTNEPT-ETETEIDANKAVEEKTKMNY 201


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 342 N*DQYCQSHTADDQSSLSFTVYASQIVGWRAVSERRMYLKSN 217
           N D  CQ+   D+ +  + TV+ +  V W  +  +RM+   N
Sbjct: 598 NIDNVCQADQPDNYTCPNATVFFNSSVIWGVIGPKRMFSGKN 639


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 415 VKQYPNDLTHHNPHAEAPKPKPELKLEIRNP 507
           V+  PND     P    P P P++K++ R P
Sbjct: 9   VQPPPNDSRSSTPATGPPPPIPKIKIKTREP 39


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 458  PKRRNRNPNSSSKYETRSPKTNEPTSQREGLRDQN 562
            P+ +  +  +SSK +T +P   +PT    GL   N
Sbjct: 1022 PEIKLPSDTASSKVDTHNPTVTQPTDDTGGLNSYN 1056


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 449 TLMPKRRNRNPNSSSKYETRSPKTNEPTSQREGLRD 556
           T   KR+    N+  K +T+   T + TS  + LRD
Sbjct: 6   TRSQKRKLEEINNQKKIKTKKKATGQQTSNTKNLRD 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,250
Number of Sequences: 5004
Number of extensions: 57381
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)