Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30960
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0562 + 34732027-34733121 31 0.68
08_02_1522 + 27651983-27652690 30 1.6
06_03_0002 - 15280292-15281550,15282714-15282840 30 1.6
02_05_0930 - 32801737-32801936,32802038-32802107 29 3.6
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 29 4.8
03_06_0243 + 32598782-32598793,32599037-32599123,32601052-326012... 29 4.8
02_01_0189 - 1273313-1274157,1274595-1275549 29 4.8
08_02_1271 - 25762750-25764276 28 6.3
06_03_0787 + 24598823-24598973,24600213-24600534,24602499-24602808 28 8.4
02_05_0561 - 29965968-29966326,29966375-29966414,29966877-299669... 28 8.4
>03_06_0562 + 34732027-34733121
Length = 364
Score = 31.5 bits (68), Expect = 0.68
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = +3
Query: 234 CDVRRRPATQRFGKHTP*SSNCSDRQRCXXXXXXXXXXXXMQRKSLLEIFKAKVPASQEP 413
C V R P T R+G +P SS S R +RK+ E + PAS P
Sbjct: 154 CKVYRSPRTSRYGAPSPPSSAASSPSRA--APPPVSSTSGRKRKAEEESDHPEAPASSAP 211
Query: 414 REAVP 428
R +P
Sbjct: 212 RRTLP 216
>08_02_1522 + 27651983-27652690
Length = 235
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +2
Query: 38 AGVASAQITLDGIRCGQLICQLDEYCSPETNRCAPCNVVCNKTHHNYDSGLCVKECQGYL 217
A ++S +T++ I G L D YCS E C P N VC+ G EC L
Sbjct: 27 ACISSPSLTIEAISDG-LRGLGDIYCSIEEIMCLPSNQVCSPQQRKLLDG--EMECSLEL 83
Query: 218 LDL 226
LD+
Sbjct: 84 LDM 86
>06_03_0002 - 15280292-15281550,15282714-15282840
Length = 461
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/64 (32%), Positives = 27/64 (42%)
Frame = +1
Query: 448 NPHAEAPKPKPELKLEIRNPVP*DERTNLST*RT*RPEPHSRIKVKAQPRQRR*APLLSN 627
NPH P P L + P N++T P P SR+ K +PR+ AP S
Sbjct: 65 NPHRSLRSPNPRLLMVQEEP-------NITTPDAGHPSPPSRLLSKHRPRRGAAAPRASL 117
Query: 628 RHPA 639
PA
Sbjct: 118 HPPA 121
>02_05_0930 - 32801737-32801936,32802038-32802107
Length = 89
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 125 TNRCAPCNVVCNKTHHNYDSGLCVKECQ 208
T + C V N+ + DSGLCV CQ
Sbjct: 27 TAQLETCTEVINREYPTCDSGLCVANCQ 54
>03_06_0327 -
33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 518 TNEPTSQREGLRDQNLTVG*KSRRNHAKDDKHRFSVTGI 634
T+ P S R+ ++ + G + NH +D R+ +TGI
Sbjct: 421 TSRPLSDRDRVKIKKALRGVRIETNHQEDQIRRYKITGI 459
>03_06_0243 +
32598782-32598793,32599037-32599123,32601052-32601257,
32601342-32601453,32601628-32601724,32601815-32601924,
32601996-32602153,32602559-32602697,32602776-32602892,
32603084-32603140,32603280-32603351,32603617-32603736,
32603818-32603983,32604067-32604188,32604373-32604447,
32604636-32604775,32604860-32604922,32605002-32605065,
32605161-32605296,32605401-32605474,32605570-32605664,
32605761-32605792,32606344-32606474,32606595-32606827,
32606916-32607723,32607815-32607967
Length = 1192
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 518 TNEPTSQREGLRDQNLTVG*KSRRNHAKDDKHRFSVTGI 634
T+ P S R+ ++ + G + NH +D R+ +TGI
Sbjct: 197 TSRPLSDRDRVKIKKALRGVRIETNHQEDQIRRYKITGI 235
>02_01_0189 - 1273313-1274157,1274595-1275549
Length = 599
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +2
Query: 26 VLMLAGVASAQITLDGIRC-GQLICQLDEYCSPETN-RCAPCNV 151
VL +AG + DG G +C D +CSPE C P V
Sbjct: 542 VLGVAGAGGVSVVRDGCALEGLCVCSEDAHCSPEKGYLCRPGRV 585
>08_02_1271 - 25762750-25764276
Length = 508
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 26 VLMLAGVASAQITLDGIRC-GQLICQLDEYCSPETN-RCAP 142
VL +AG + +G G +C DE+CSPE C P
Sbjct: 447 VLGVAGAGGVNVARNGCGMEGLCVCSEDEHCSPEKGYLCRP 487
>06_03_0787 + 24598823-24598973,24600213-24600534,24602499-24602808
Length = 260
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 647 VSSAGCLLLRSGAYRLWRGCALTFIR 570
VS +GC+ L +G Y WR + T+I+
Sbjct: 16 VSLSGCIRLGNGGYEEWRMGSATYIK 41
>02_05_0561 -
29965968-29966326,29966375-29966414,29966877-29966951,
29967003-29967107,29967453-29967592,29967691-29967775
Length = 267
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +2
Query: 86 QLICQLDEYCSPETNRCAPCNVVCNKTHHNYDSGLCVKECQ 208
+ C +EY + E+N CA + Y GL EC+
Sbjct: 182 EFACPFNEYINDESNDCASTMFSYINLYGKYPPGLFANECR 222
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,623,874
Number of Sequences: 37544
Number of extensions: 428492
Number of successful extensions: 1191
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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