Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30957
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces... 38 0.001
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 29 0.50
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 29 0.66
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ... 28 1.5
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 27 2.0
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 27 2.0
SPCC1442.15c |cox18||mitochondrial inner membrane protein Cox18|... 27 2.6
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 26 4.6
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 6.1
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 8.1
>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 118
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +3
Query: 111 EKPQAEVSPIHRIRITLTSRNVRSLE 188
+K Q S +HRIRITLTSRNVR+LE
Sbjct: 8 QKEQQIPSTVHRIRITLTSRNVRNLE 33
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 29.5 bits (63), Expect = 0.50
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +3
Query: 438 VKSAHFLTNRPKSAKSLINQKNRPDRVECCSSLEQESTIKERGLQRQRAKNR 593
VK FLTN + SL+ Q NRP + S +E TI+ L RQ K R
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRPSTL-FSSDIEYTPTIQ---LNRQVLKTR 722
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 29.1 bits (62), Expect = 0.66
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 642 FWGRGAVKH*IGTLKGAPDL 701
+WGR +H +G L+G P+L
Sbjct: 227 YWGRAIARHFVGQLRGGPNL 246
>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 601 PDRRFFAL*RWSPRSLIVDSCSK 533
PD +FF + W P L + SC K
Sbjct: 220 PDAKFFGIFDWDPHGLCIYSCFK 242
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 84 AAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRS 182
A V + D+EKPQ +V+ R+ L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 462 NRPKSAKSLINQKNRPDRVECCSSLEQESTIKERGLQRQRAKNRL--SGRWPTY 617
++PK KSL DR S + +++ L AKN+ S +WPT+
Sbjct: 695 SKPKVEKSLDKHNMNNDRSFLVPSRDARNSLTSLSLHSNVAKNKSSHSSKWPTH 748
>SPCC1442.15c |cox18||mitochondrial inner membrane protein
Cox18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 202
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 590 VFRPLTLESTFFNSGLLFQTGTTLNPIWSILLIY 489
+F + S FF S + F+T T L+ W+ IY
Sbjct: 157 IFNTAGIMSAFFVSFMAFKTSTALSLYWTTSAIY 190
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -2
Query: 226 TTHYRANWVPGP-PSSERTLREVRVILMRWI 137
+T Y W+PGP SE + E R RW+
Sbjct: 131 STEYVPVWLPGPEKGSETIINETRSQQSRWL 161
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 384 PFXCATVGKGDRCGPLRYYASWRKGDV 304
P C V G R GP Y +W+ DV
Sbjct: 392 PKVCLFVRNGARLGPTSIYHAWKAFDV 418
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 65 IPAEINNFSIKNCSALNRRNL 3
+ +E+N+ IKN S LN RNL
Sbjct: 592 LESELNSSKIKNESLLNERNL 612
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,070,540
Number of Sequences: 5004
Number of extensions: 66230
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -