Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30957
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0258 - 11153709-11156090 31 0.90
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 31 1.2
07_01_0344 - 2490700-2493249 30 1.6
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 30 2.1
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663 29 2.8
12_02_0964 - 24860373-24860381,24860427-24860768,24861436-248615... 29 3.6
03_02_0942 - 12595108-12595347,12596227-12596362,12596917-12597083 29 3.6
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396... 29 3.6
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 28 6.4
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 28 8.4
08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245... 28 8.4
06_01_0092 - 775290-775691 28 8.4
>05_03_0258 - 11153709-11156090
Length = 793
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -2
Query: 412 NINAYNLPFAIQXRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 278
N+N YNL F + + + R +L ++++ GC R++W T
Sbjct: 390 NVNTYNLIFGMLGK---KSRFTAMLEMLEEMSRSGCTPNRVTWNT 431
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 81 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLE 188
A + G + +A ++RIRITL+S+NV++LE
Sbjct: 9 AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLE 44
>07_01_0344 - 2490700-2493249
Length = 849
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 145 RWIGETSAWGFSMSLPDTTAAA 80
RWIG++S F++SLP T A A
Sbjct: 46 RWIGDSSPKNFTLSLPGTVATA 67
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Frame = +3
Query: 78 MAAAVV----SGKDIEKPQAEVSPIHRIRITLTSRNVRSLE 188
MAAA V G + +A ++RIRITL+S+NV++LE
Sbjct: 1 MAAAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLE 41
>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
Length = 741
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 74 QHGSRCSVRQRHRETPGRGLPYPPHQDHSYFSQCALTR 187
+H SRCS R R R T P QD + + CA T+
Sbjct: 676 RHSSRCSCRYRSRRTRSPSSLTPRDQDGTGDAGCATTK 713
>12_02_0964 -
24860373-24860381,24860427-24860768,24861436-24861583,
24862070-24862089
Length = 172
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 53 SRPEFNKQHGSRCSVRQRHRETPGRGLPYPPHQDH 157
+RPE GSR + R+ R G P PPH H
Sbjct: 90 ARPEAAAGGGSRGTARRILRSASGSATPLPPHHLH 124
>03_02_0942 - 12595108-12595347,12596227-12596362,12596917-12597083
Length = 180
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +3
Query: 558 ERGLQRQRAKNRLSGRWPTYVNHHPNQVF 644
E RQR +R SGRW NH N F
Sbjct: 112 ETARNRQRVSHRRSGRWRWMQNHDNNTTF 140
>01_06_1507 - 37838645-37839311,37839393-37839499,37839588-37839663,
37839747-37839869,37840051-37840208,37840311-37840385,
37840466-37840506,37840594-37840670,37840755-37840883,
37840990-37841060,37841237-37841332,37841489-37841584,
37841681-37841953,37842871-37842957,37843101-37843178,
37843350-37843514,37843622-37843768,37843921-37843983,
37844082-37844201,37844352-37844543,37844672-37844748,
37845094-37845196,37845684-37845887
Length = 1074
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 77 HGSRCSVRQRHRETPGRGLPYPPHQDHSYFSQCALTRGGARYPIRP 214
HG R H ++ GR PY +SY S A + G RY P
Sbjct: 953 HGRYPYARDNHHDSRGRVPPYHQSGGNSYQSHSAPSAGPGRYAQPP 998
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +3
Query: 81 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLE 188
A + SGK + EV HRIRITL+S++V++LE
Sbjct: 9 APPMKSGKIGFESSQEVQ--HRIRITLSSKSVKNLE 42
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 80 GSRCSVRQRHRETPGRGLPYPP 145
G CS R+RHR G LP+ P
Sbjct: 73 GVTCSRRRRHRRVTGLSLPHTP 94
>08_01_0002 -
20208-20594,21525-21671,21754-21917,22005-22162,
24533-24826,24916-25121,25216-25812,26366-27097
Length = 894
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 600 LIDGFSPFDVGVHVL**WTLVPNWNNTQPYLVYSFD 493
+ID F + +G+ +L W + +W P+LVY D
Sbjct: 746 VIDLFCTWFLGLLLLKFWVKLVHWTTVTPFLVYFID 781
>06_01_0092 - 775290-775691
Length = 133
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -2
Query: 346 RASSLLRQLAKGGCAARR 293
RA+SLLRQL + GCAA +
Sbjct: 22 RAASLLRQLIEDGCAAAK 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,227,090
Number of Sequences: 37544
Number of extensions: 485378
Number of successful extensions: 1205
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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