Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30956
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    26   2.5  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   7.8  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    25   7.8  

>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +3

Query: 177 GVXVKXGXRKMVGRKMCKDLHKAVKLXWTVDLWTCQLSRESSYL 308
           G+ V     + V  +  KD        WTV LW C  SR    L
Sbjct: 399 GIDVMTSNSQNVFLEKNKDFALTSSFDWTVRLWQCSPSRNQHEL 442


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = -2

Query: 468 SASXPRRPDWICPRCXXXXXXXXXXXXSQWF-GLLNXSSFSGPHGFAPE 325
           S + PR  DW CP C               F G  + S+ +G + F+P+
Sbjct: 338 SKNRPRPGDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPD 386


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 266 RPVDLPAVEGIIILNILSWG 325
           R +D P + G   LN+L WG
Sbjct: 240 RVLDAPGLAGDFYLNLLDWG 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,578,967
Number of Sequences: 5004
Number of extensions: 25156
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)