Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30955
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.21 
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    25   4.4  
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc...    24   5.9  
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...    24   7.8  
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...    24   7.8  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    24   7.8  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 29.1 bits (62), Expect = 0.21
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 194 SNCFANESTTGSESRPAEKIRRETQRADAWVRLHVDLF 81
           S+C  +ES    ES PA K   E    D+W+    ++F
Sbjct: 299 SSCLLDESMVTGESVPARKFPLEDNSLDSWMIASCNIF 336


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 18  PSALILGAGLGTRVTVLVE 74
           PS+ I+GAGLG  V +L +
Sbjct: 489 PSSAIMGAGLGKDVALLTD 507


>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 3   VIQPMPSALILGAGLGTRVTVLVELDKEVDVQPNPCISPLSFSPDLL 143
           V+QP  SAL +G+G G  V  +  +     V PN  +  +   P L+
Sbjct: 75  VLQPGCSALDIGSGSGYLVAAMARM-----VAPNGTVKGIEHIPQLV 116


>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 290 NWKGLRATSKLSI 328
           +WKGLR T KL+I
Sbjct: 52  DWKGLRVTVKLTI 64


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 290 NWKGLRATSKLSI 328
           +WKGLR T KL+I
Sbjct: 52  DWKGLRVTVKLTI 64


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 149 PAEKIRRETQRADAWVRLHVDLFVEFDE 66
           PA+++R       A++R HV LF  +++
Sbjct: 759 PAKRVRMSAIMNHAYLRSHVSLFETYND 786


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,170,001
Number of Sequences: 5004
Number of extensions: 17538
Number of successful extensions: 41
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)