Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30954
         (493 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-1421|AAM71028.1|  155|Drosophila melanogaster CG8857-PC...   128   5e-30
AE013599-1420|AAF58552.1|  155|Drosophila melanogaster CG8857-PA...   128   5e-30
AE013599-1422|AAM71029.1|  154|Drosophila melanogaster CG8857-PB...   113   9e-26

>AE013599-1421|AAM71028.1|  155|Drosophila melanogaster CG8857-PC,
           isoform C protein.
          Length = 155

 Score =  128 bits (308), Expect = 5e-30
 Identities = 64/88 (72%), Positives = 74/88 (84%), Gaps = 3/88 (3%)
 Frame = +1

Query: 1   AEERERAFQKQATVFLNRK---GGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 171
           A++ ERAFQKQ  V LNRK   G  K+K +R  ++VGLGFKTPREAI+GTYIDKKCP+TG
Sbjct: 2   ADQNERAFQKQFGVNLNRKVKPGITKKKLLRRSRDVGLGFKTPREAIDGTYIDKKCPWTG 61

Query: 172 NVSIRGRILTGVVQKMKMQRTIVIRRDY 255
           +V IRGRILTGVV+K KMQRTIVIRRDY
Sbjct: 62  DVRIRGRILTGVVRKAKMQRTIVIRRDY 89



 Score =  101 bits (242), Expect = 5e-22
 Identities = 46/53 (86%), Positives = 49/53 (92%)
 Frame = +3

Query: 255 LHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 413
           LH++ KY+RFEKRHRNMSVH SP FRDVE GDIVTIGECRPLSKTVRFNVLKV
Sbjct: 90  LHFVRKYSRFEKRHRNMSVHCSPVFRDVEHGDIVTIGECRPLSKTVRFNVLKV 142


>AE013599-1420|AAF58552.1|  155|Drosophila melanogaster CG8857-PA,
           isoform A protein.
          Length = 155

 Score =  128 bits (308), Expect = 5e-30
 Identities = 64/88 (72%), Positives = 74/88 (84%), Gaps = 3/88 (3%)
 Frame = +1

Query: 1   AEERERAFQKQATVFLNRK---GGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 171
           A++ ERAFQKQ  V LNRK   G  K+K +R  ++VGLGFKTPREAI+GTYIDKKCP+TG
Sbjct: 2   ADQNERAFQKQFGVNLNRKVKPGITKKKLLRRSRDVGLGFKTPREAIDGTYIDKKCPWTG 61

Query: 172 NVSIRGRILTGVVQKMKMQRTIVIRRDY 255
           +V IRGRILTGVV+K KMQRTIVIRRDY
Sbjct: 62  DVRIRGRILTGVVRKAKMQRTIVIRRDY 89



 Score =  101 bits (242), Expect = 5e-22
 Identities = 46/53 (86%), Positives = 49/53 (92%)
 Frame = +3

Query: 255 LHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 413
           LH++ KY+RFEKRHRNMSVH SP FRDVE GDIVTIGECRPLSKTVRFNVLKV
Sbjct: 90  LHFVRKYSRFEKRHRNMSVHCSPVFRDVEHGDIVTIGECRPLSKTVRFNVLKV 142


>AE013599-1422|AAM71029.1|  154|Drosophila melanogaster CG8857-PB,
           isoform B protein.
          Length = 154

 Score =  113 bits (273), Expect = 9e-26
 Identities = 54/85 (63%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
 Frame = +1

Query: 4   EERERAFQKQ-ATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVS 180
           ++ ER+F+KQ A V + RK    +K  R ++ +GLGF+ P EAI+GTYIDKKCP+TG+V 
Sbjct: 4   QQTERSFRKQHAVVVVRRKSPNLKKRPRFYRQIGLGFRAPAEAIDGTYIDKKCPWTGDVR 63

Query: 181 IRGRILTGVVQKMKMQRTIVIRRDY 255
           IRGRILTGVV+K KMQRTIVIRRDY
Sbjct: 64  IRGRILTGVVRKAKMQRTIVIRRDY 88



 Score =  101 bits (242), Expect = 5e-22
 Identities = 46/53 (86%), Positives = 49/53 (92%)
 Frame = +3

Query: 255 LHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 413
           LH++ KY+RFEKRHRNMSVH SP FRDVE GDIVTIGECRPLSKTVRFNVLKV
Sbjct: 89  LHFVRKYSRFEKRHRNMSVHCSPVFRDVEHGDIVTIGECRPLSKTVRFNVLKV 141


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,170,571
Number of Sequences: 53049
Number of extensions: 416221
Number of successful extensions: 954
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1721789184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)