Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30951
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   112   6e-26
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    46   6e-06
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    43   5e-05
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    29   0.54 
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   6.7  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   8.9  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   8.9  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  112 bits (269), Expect = 6e-26
 Identities = 69/197 (35%), Positives = 96/197 (48%), Gaps = 4/197 (2%)
 Frame = +2

Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFEDGPSISASSVRRLYFSVV*KCPLR----STNLP 343
           NPLF  RP++F IGQ IQP RDLSRF   P       RR   ++  K P         L 
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 344 RHWTRLQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAKHSHQ 523
           ++      +  +++   T                       +S  ++         H   
Sbjct: 84  KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVS--KKPYNVKYGLNHVVA 141

Query: 524 AGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALT 703
               ++  LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H+KT   LA+T
Sbjct: 142 LIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVT 201

Query: 704 NVESGDRGSFSKVVEAI 754
            V   D+   + +V A+
Sbjct: 202 EVREEDKNELASIVSAV 218



 Score = 75.8 bits (178), Expect = 6e-15
 Identities = 32/51 (62%), Positives = 41/51 (80%)
 Frame = +1

Query: 256 RWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 408
           +WP+YIR+QR++ +L  RLKVPP I QF +TLDK TA  +FK+L KYRPET
Sbjct: 51  KWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPET 101


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 46.0 bits (104), Expect = 6e-06
 Identities = 25/76 (32%), Positives = 38/76 (50%)
 Frame = +2

Query: 521 QAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLAL 700
           +A R+ E  LV++A D+ P++++  +P LC    VPY     K  LG   + K  T   +
Sbjct: 63  KAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVM 122

Query: 701 TNVESGDRGSFSKVVE 748
             V  G +   SKV E
Sbjct: 123 I-VPGGKKKDMSKVEE 137


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = +2

Query: 551 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 661
           +V+A D +PIE++L LP LC    VPY  V  K+ LG
Sbjct: 51  IVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 17/45 (37%), Positives = 29/45 (64%)
 Frame = -2

Query: 289 SDAGCGYTWAIFKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLN 155
           S AG G+  AIF +GQ+  + N  ++ KV+ PL+   I +++GL+
Sbjct: 166 SFAGLGFL-AIFLAGQLKMFRNKTSSWKVVVPLVPLSIASWIGLS 209


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 289 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 390
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +1

Query: 163 QENCESSLREEAKELCYWSGHSANS*LVQI*RWPKYIRIQRQKAVLQRRLKVPPPINQFT 342
           Q+N ++S++E+A E    S HS +S        P+ +       ++ +RL + PP++QFT
Sbjct: 97  QQNSKNSIKEDANEHSVNSAHSKSSSNAS----PESL---NPSQMMSKRLSL-PPMSQFT 148

Query: 343 QT 348
            +
Sbjct: 149 DS 150


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -3

Query: 471 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 301
           L F   L  +S  Q  FP  FS     L+NL   +  ++ Q L    + R    +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,092
Number of Sequences: 5004
Number of extensions: 50914
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)