Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30951
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 125 4e-29
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 110 1e-24
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 83 2e-16
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 44 2e-04
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 42 4e-04
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 42 4e-04
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 41 0.001
02_05_1324 - 35702184-35702267,35702405-35702476,35702675-357027... 29 4.0
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 28 9.3
05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033 28 9.3
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 28 9.3
01_01_1106 + 8750597-8754031 28 9.3
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 125 bits (301), Expect = 4e-29
Identities = 75/195 (38%), Positives = 98/195 (50%), Gaps = 1/195 (0%)
Frame = +2
Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFEDGPSISASSVRRLYFSVV*KCPLRSTNLPRHWT 355
NPLFEKRPK F IG + P +DL RF P + +R K P R
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 356 R-LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAKHSHQAGR 532
+ L F + + ++ H
Sbjct: 82 KNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEA-KKPIVVKYGLNHVTYLIE 140
Query: 533 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 712
+ + LVVIAHDVDPIELV++LPALCRKM VPYCIVKGK+RLG++VH+KT + L LT V+
Sbjct: 141 QSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVK 200
Query: 713 SGDRGSFSKVVEAIK 757
+ D+ FSK++EAIK
Sbjct: 201 NEDKLEFSKILEAIK 215
Score = 78.6 bits (185), Expect = 5e-15
Identities = 33/50 (66%), Positives = 42/50 (84%)
Frame = +1
Query: 256 RWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 405
+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 49 KWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 98
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 110 bits (264), Expect = 1e-24
Identities = 49/75 (65%), Positives = 64/75 (85%)
Frame = +2
Query: 533 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 712
+ + LVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+RLG++VH+KT + L LT V+
Sbjct: 126 QSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVK 185
Query: 713 SGDRGSFSKVVEAIK 757
+ D+ FSK++EAIK
Sbjct: 186 NEDKLEFSKILEAIK 200
Score = 61.7 bits (143), Expect = 6e-10
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = +1
Query: 256 RWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 405
RWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 50 RWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAE 99
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = +2
Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFEDGP 265
NPLFEKRPK F IG + P +DL RF P
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWP 52
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 83.4 bits (197), Expect = 2e-16
Identities = 63/195 (32%), Positives = 84/195 (43%), Gaps = 1/195 (0%)
Frame = +2
Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFEDGPSISASSVRRLYFSVV*KCPLRSTNLPRHWT 355
NPLFEKRPK F IG + P +DL RF P + +R K P R
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65
Query: 356 R-LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAKHSHQAGR 532
+ L F + + ++ H
Sbjct: 66 KNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEA-KKPIVVKYGLNHVTYLIE 124
Query: 533 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 712
+ + LVVIAHDVDPIELV++LPALCRKM +VH+KT + L LT V+
Sbjct: 125 QSKAQLVVIAHDVDPIELVVWLPALCRKM--------------EIVHKKTASVLCLTTVK 170
Query: 713 SGDRGSFSKVVEAIK 757
+ D+ FSK++EAIK
Sbjct: 171 NEDKLEFSKILEAIK 185
Score = 78.6 bits (185), Expect = 5e-15
Identities = 33/50 (66%), Positives = 42/50 (84%)
Frame = +1
Query: 256 RWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 405
+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 33 KWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 82
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 43.6 bits (98), Expect = 2e-04
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 530 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GALVHRKTCTCLALT 703
R + L +IA ++ PI+++ +P LC + +PY V K L R TC L LT
Sbjct: 57 RRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGTTKRPTCCVLVLT 116
Query: 704 NVESGD 721
G+
Sbjct: 117 KPAKGE 122
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +2
Query: 551 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDR 724
VV+A D +P+E++L LP L VPY V K LG V R C +N S R
Sbjct: 52 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASNLR 111
Query: 725 GSFSKVVEAIK 757
+ + AI+
Sbjct: 112 DPINNLKVAIE 122
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 530 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GALVHRKTCTCLALT 703
R L VIA ++ PI+++ +P LC + +PY V K L R TC L +T
Sbjct: 57 RRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGTTKRPTCCVLVMT 116
Query: 704 NVESGD 721
G+
Sbjct: 117 KPAKGE 122
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +2
Query: 551 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDR 724
VV+A D +P+E++L LP L VPY V K LG V R C +N S +
Sbjct: 54 VVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEGSQLK 113
Query: 725 GSFSKVVEAIK 757
+ +AI+
Sbjct: 114 TPIQNLKDAIE 124
>02_05_1324 -
35702184-35702267,35702405-35702476,35702675-35702740,
35702826-35702857,35702941-35703100,35703254-35703389,
35703453-35703598,35703827-35704072,35704152-35704259,
35704436-35704557,35704730-35704820,35704903-35705133,
35705212-35705355,35705875-35705951,35706158-35706281,
35706368-35706535,35706625-35706948
Length = 776
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 183 SSRRGQRTLLLVRAFSQL-VTCPDLKMAQVYPHPASEGCTSASSESAPSDQPIYPD 347
+SR R LLL+ A S L CP A P PA+ ASS A D P+ D
Sbjct: 32 TSRSRSRALLLLPASSPLRAFCP----ASRRPSPATCSAAYASSSMATDDNPLLAD 83
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 273 PHPASEGCTSASSESAPSDQP 335
P PA E +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033
Length = 160
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +3
Query: 147 SKRLSPRKL*ILS---SRRGQRTLLLVRAFSQLVTCPDLKMA 263
S L PR L +L +RRG R L +VRA S V PD A
Sbjct: 13 SPSLGPRSLRLLRGALARRGSRRLGVVRAASAEVAAPDAAAA 54
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +3
Query: 180 LSSRRGQRTLLLVRAFSQLVTCPDLKMAQVYPHPASEGCTSASSESAPSDQPIYP 344
L SRR + + RAF + K P PA E TSAS+ + P P+ P
Sbjct: 158 LFSRRD--SFITHRAFCDALAEESAKARAAPPPPADEDGTSASAGAPPPQAPLPP 210
>01_01_1106 + 8750597-8754031
Length = 1144
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = +1
Query: 589 SLPASVMP*NGCTILHCQG----QIPPRGTCTSQDMHMLSSNKCGV 714
+LP+S+ +L+ +G +I P C+ Q++H L+ ++CGV
Sbjct: 532 TLPSSIGTLQSLHLLNLKGCGNLEILPDTICSLQNLHFLNLSRCGV 577
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,414,962
Number of Sequences: 37544
Number of extensions: 379607
Number of successful extensions: 1028
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -