Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30951
(758 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 87 2e-17
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 87 2e-17
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 79 3e-15
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 59 4e-09
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 42 6e-04
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.031
U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonin... 32 0.51
U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase ... 32 0.51
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 8.3
AF040648-3|AAL06034.2| 453|Caenorhabditis elegans Hypothetical ... 28 8.3
AF040648-1|AAK21412.1| 519|Caenorhabditis elegans Hypothetical ... 28 8.3
AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical ... 28 8.3
AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical ... 28 8.3
AB007816-1|BAA28352.1| 394|Caenorhabditis elegans matrix metall... 28 8.3
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 86.6 bits (205), Expect = 2e-17
Identities = 38/69 (55%), Positives = 52/69 (75%)
Frame = +2
Query: 548 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRG 727
LV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V D+
Sbjct: 155 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKS 214
Query: 728 SFSKVVEAI 754
+ +K+VE +
Sbjct: 215 ALNKLVETV 223
Score = 84.2 bits (199), Expect = 9e-17
Identities = 39/84 (46%), Positives = 49/84 (58%)
Frame = +1
Query: 256 RWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXX 435
+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 57 KWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLR 116
Query: 436 XXXXXXXXXXXXXXXXRPNTIRSG 507
RPNT+R G
Sbjct: 117 ARAEARAAGKKEEVTKRPNTVRHG 140
Score = 44.8 bits (101), Expect = 7e-05
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +2
Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFEDGP 265
NPLFEKR +NF IGQ IQP +D++RF P
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 59
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 86.6 bits (205), Expect = 2e-17
Identities = 38/69 (55%), Positives = 52/69 (75%)
Frame = +2
Query: 548 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRG 727
LV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V D+
Sbjct: 135 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKS 194
Query: 728 SFSKVVEAI 754
+ +K+VE +
Sbjct: 195 ALNKLVETV 203
Score = 79.8 bits (188), Expect = 2e-15
Identities = 33/51 (64%), Positives = 42/51 (82%)
Frame = +1
Query: 256 RWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 408
+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 57 KWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES 107
Score = 44.8 bits (101), Expect = 7e-05
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +2
Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFEDGP 265
NPLFEKR +NF IGQ IQP +D++RF P
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 59
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 79.4 bits (187), Expect = 3e-15
Identities = 33/51 (64%), Positives = 42/51 (82%)
Frame = +1
Query: 256 RWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 408
+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 160 KWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
Score = 44.8 bits (101), Expect = 7e-05
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +2
Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFEDGP 265
NPLFEKR +NF IGQ IQP +D++RF P
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 58.8 bits (136), Expect = 4e-09
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +1
Query: 256 RWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 354
+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 160 KWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Score = 44.8 bits (101), Expect = 7e-05
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +2
Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFEDGP 265
NPLFEKR +NF IGQ IQP +D++RF P
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +2
Query: 548 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 661
++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 53 IIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/76 (22%), Positives = 37/76 (48%)
Frame = +2
Query: 530 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNV 709
R E + ++A +V PI++ +P +C + +PY + + +LG V + + L
Sbjct: 81 RRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPSILIFVKP 140
Query: 710 ESGDRGSFSKVVEAIK 757
+ + +V EA++
Sbjct: 141 SGDFKELYDEVAEALR 156
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.031
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -3
Query: 450 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 331
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonine
kinase protein.
Length = 982
Score = 31.9 bits (69), Expect = 0.51
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +2
Query: 488 PTPSDPAKHSHQAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL 667
P+PS+P S + E +++ AHD DP++ + P + + +P+ V K R+ L
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAPV--KDLHMPHRAV--KERIATL 507
Query: 668 VHRKTCT 688
+ K T
Sbjct: 508 QNHKFAT 514
>U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase
protein 18, isoforma protein.
Length = 982
Score = 31.9 bits (69), Expect = 0.51
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +2
Query: 488 PTPSDPAKHSHQAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL 667
P+PS+P S + E +++ AHD DP++ + P + + +P+ V K R+ L
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAPV--KDLHMPHRAV--KERIATL 507
Query: 668 VHRKTCT 688
+ K T
Sbjct: 508 QNHKFAT 514
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 323 LRSTNLPRHWTRLQLRA 373
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>AF040648-3|AAL06034.2| 453|Caenorhabditis elegans Hypothetical
protein H19M22.3c protein.
Length = 453
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 583 LNRINIMSDDHKCAFFFSTSLVTVFCRIGWCWASLVEAH 467
+N I + DD KC ++ + FC W + +VEAH
Sbjct: 271 INEIQLDIDD-KCGVIWNYGGASDFCLYVWLMSQIVEAH 308
>AF040648-1|AAK21412.1| 519|Caenorhabditis elegans Hypothetical
protein H19M22.3a protein.
Length = 519
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 583 LNRINIMSDDHKCAFFFSTSLVTVFCRIGWCWASLVEAH 467
+N I + DD KC ++ + FC W + +VEAH
Sbjct: 303 INEIQLDIDD-KCGVIWNYGGASDFCLYVWLMSQIVEAH 340
>AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical
protein Y19D10A.9 protein.
Length = 296
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 273 PHPASEGCTSASSESAPSDQPIYPDTG 353
P S G T PSD PIYP +G
Sbjct: 195 PFFGSSGATDFPVSGGPSDSPIYPASG 221
>AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical
protein F56A4.2 protein.
Length = 296
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 273 PHPASEGCTSASSESAPSDQPIYPDTG 353
P S G T PSD PIYP +G
Sbjct: 195 PFFGSSGATDFPVSGGPSDSPIYPASG 221
>AB007816-1|BAA28352.1| 394|Caenorhabditis elegans matrix
metalloproteinase protein.
Length = 394
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 583 LNRINIMSDDHKCAFFFSTSLVTVFCRIGWCWASLVEAH 467
+N I + DD KC ++ + FC W + +VEAH
Sbjct: 212 INEIQLDIDD-KCGVIWNYGGASDFCLYVWLMSQIVEAH 249
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,795,652
Number of Sequences: 27780
Number of extensions: 298133
Number of successful extensions: 763
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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