Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30950
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   136   1e-33
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   130   6e-32
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    33   0.016
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   0.35 
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    26   2.4  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    25   3.2  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    25   5.6  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    24   7.4  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    24   9.8  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    24   9.8  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  136 bits (329), Expect = 1e-33
 Identities = 60/88 (68%), Positives = 73/88 (82%)
 Frame = +1

Query: 4   RKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMF 183
           +KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY  +
Sbjct: 3   QKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEY 62

Query: 184 QLPKLYAKLHYCVSCAIHSKVVRKDRRK 267
            +PKLY KL YCVSCAIHS+VVR   R+
Sbjct: 63  TIPKLYIKLQYCVSCAIHSRVVRVRSRE 90



 Score = 24.6 bits (51), Expect = 5.6
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 255 RSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 338
           RS++ RRIRT PP+  + RD  +  P AV +
Sbjct: 87  RSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  130 bits (315), Expect = 6e-32
 Identities = 57/88 (64%), Positives = 72/88 (81%)
 Frame = +1

Query: 4   RKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMF 183
           +KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY  +
Sbjct: 3   QKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEY 62

Query: 184 QLPKLYAKLHYCVSCAIHSKVVRKDRRK 267
            +PK+Y KL YCVSCAIH++VVR   R+
Sbjct: 63  AIPKIYVKLQYCVSCAIHARVVRVRSRE 90



 Score = 25.4 bits (53), Expect = 3.2
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 255 RSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 338
           RS++ RRIRT PP+  + RD  R  P A+ +
Sbjct: 87  RSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 33.1 bits (72), Expect = 0.016
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
 Frame = +1

Query: 91  KDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRKDR--R 264
           +DK   K + R +     +   N  ++Y +F++PK        +   +HS VV+ +R   
Sbjct: 60  EDKDTWKRLQREVTILRQLHHPNIITLYQVFRVPKYTVLALEYMDTDLHSMVVKHNRLDE 119

Query: 265 KTEESVLLPRVTSLGTCHV----HRQCKGSDLLLNK 360
            T   +    V ++  CH+    HR  K  ++LLNK
Sbjct: 120 CTTRKIFRQIVHAIDYCHLHRVAHRDLKLENILLNK 155


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 0.35
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 79  RCVPKDKAIKKFVIRNIVEAAAVRDI 156
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -1

Query: 305 REVTLGRSTDSSVFLRSFLTTLLWMAH 225
           R  TL   T   VFLR  L  LLW  H
Sbjct: 369 RNNTLPLLTTKRVFLRGVLEELLWFIH 395


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -3

Query: 138 RFYDVPNHELFDGLVLWHAPRAVCASHGFNVTTSMLGASS 19
           + +DV + +L + + L   P+A+C  +  ++ TS++  SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
 Frame = +1

Query: 85  VPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLY--AKLHYCVSCAIHSKVVRKD 258
           +PKDKA++    RN  +  A   I DA +    +  + +  +K     S     K+  K 
Sbjct: 167 IPKDKAVENNHQRNAEKPVASDKITDAKLLARLERVRAWKESKAKQEASKKEEHKLNTKP 226

Query: 259 RRKTEESVLLPRVTSLGTCHVHRQCKGSDLLLN 357
           +   ++   +P  T +    ++RQ   SD+  N
Sbjct: 227 QVTAKDQNAMPS-TGISGFEINRQKDTSDMKRN 258


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 256 DRRKTEESVLLPRVTSLGT 312
           DR +TE SVL  RVT +G+
Sbjct: 5   DRSRTEISVLSDRVTDVGS 23


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 276 IRTPPKSNFPRDMSR 320
           IRTP KS FP+D ++
Sbjct: 157 IRTPKKSYFPKDHAK 171


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 73   CARCVPKDKAIKKFVIRNIVEAAAVRDINDAS 168
            C R  P  KA+    +RN +E A    I D +
Sbjct: 1214 CCRSSPMQKALMVQKVRNTLEKAVTLAIGDGA 1245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,460,391
Number of Sequences: 5004
Number of extensions: 25931
Number of successful extensions: 78
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)