Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30950
         (395 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...   137   3e-33
09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280           29   1.0  
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731...    27   4.1  
03_02_0633 + 9978193-9978376,9978661-9978845,9979284-9979466,997...    27   5.5  
08_02_1601 - 28138206-28138597,28138928-28139054,28139150-281399...    27   7.2  
05_03_0038 + 7612866-7613132,7615691-7616608                           27   7.2  
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486...    27   7.2  
04_01_0268 - 3585907-3588086,3590167-3590326                           26   9.6  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score =  137 bits (331), Expect = 3e-33
 Identities = 58/87 (66%), Positives = 73/87 (83%)
 Frame = +1

Query: 7   KRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQ 186
           KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+  + 
Sbjct: 4   KRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYV 63

Query: 187 LPKLYAKLHYCVSCAIHSKVVRKDRRK 267
           LPKLYAK+H+CVSCAIH+ +VR   R+
Sbjct: 64  LPKLYAKVHHCVSCAIHAHIVRVRSRE 90


>09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280
          Length = 422

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 207 APLLRVMRHPQQSCQERSKKDRRIRTPPK 293
           +PL R++R     C   +KK+RR+R P K
Sbjct: 317 SPLFRILRTLFGLCSAEAKKNRRLRNPAK 345


>07_03_0011 +
           12370624-12370684,12372573-12372718,12372793-12373129,
           12374323-12374452,12375346-12375406,12375572-12375618,
           12376873-12376950,12377195-12377345,12377495-12377558,
           12377735-12377893,12378007-12378128,12378952-12378981,
           12379050-12379124,12379563-12379644,12379809-12379938,
           12381417-12382164,12382833-12383054,12383127-12383276,
           12384851-12384904,12384985-12385058,12386130-12386204,
           12386365-12386584
          Length = 1071

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 57  REMHKLRAVRAKGQGHQKVRD*EHRRSGGGQR 152
           R+  K ++ R K +G +K R  EH R  GG+R
Sbjct: 101 RKREKTQSDRDKDKGKEKERMEEHERRPGGER 132


>03_02_0633 +
           9978193-9978376,9978661-9978845,9979284-9979466,
           9979564-9979695,9979826-9980011,9980381-9980470,
           9980540-9980623,9980704-9980844,9980919-9981146,
           9981511-9981624
          Length = 508

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
 Frame = +1

Query: 169 VYPMFQLPK-LYAKLHYCVSCAIHSKVVRKDRRKTEES--VLLPRVTSLGTCH----VHR 327
           +Y +   P  +Y  + YC    +   +V K R + +E+  +    ++ +  CH    VHR
Sbjct: 80  LYEVIYTPTDIYVVMEYCKFGELFDYIVEKGRLQEDEARRIFQQIISGVEYCHRNMVVHR 139

Query: 328 QCKGSDLLLN 357
             K  +LLL+
Sbjct: 140 DLKPENLLLD 149


>08_02_1601 -
           28138206-28138597,28138928-28139054,28139150-28139914,
           28140714-28140929,28141433-28141903
          Length = 656

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -3

Query: 165 GIVNISDRRRFYDVPNHELFDGLVLWHAPRAVCASHGFN--VTTSMLGASSIT 13
           GI  + D   +YD  +  LF+ L+    P A  +SH F+  V T  +  S+ T
Sbjct: 439 GIDMVDDGMPYYDAMDDNLFNDLLSSVQPSAGSSSHAFSGPVLTQEVNNSTYT 491


>05_03_0038 + 7612866-7613132,7615691-7616608
          Length = 394

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 207 APLLRVMRHPQQSCQERSKKDRRIRTPPK 293
           +PL R++R     C   +KK+RR+R   K
Sbjct: 305 SPLFRILRSLFGLCSAEAKKNRRLRNSAK 333


>05_01_0554 +
           4856131-4856605,4858051-4858098,4860611-4860792,
           4861409-4863136
          Length = 810

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 147 DRRRFYDVPNHELFD 103
           DR  FYD PN+E FD
Sbjct: 354 DRTLFYDEPNYEAFD 368


>04_01_0268 - 3585907-3588086,3590167-3590326
          Length = 779

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 242 LLWMAHDTQ*WSLAYNLGSWNIGYT 168
           +LW+A+    W+  Y LGS ++G T
Sbjct: 100 VLWLAYQLGGWAGTYALGSMSLGRT 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,441,915
Number of Sequences: 37544
Number of extensions: 207228
Number of successful extensions: 579
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)