Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30950
         (395 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X14247-1|CAA32463.1|  114|Drosophila melanogaster ribosomal prot...   158   2e-39
X13625-1|CAB38441.1|  114|Drosophila melanogaster protein ( Dros...   158   2e-39
AY069761-1|AAL39906.1|  114|Drosophila melanogaster RE01079p pro...   158   2e-39
AE014134-2931|AAN11005.1|  114|Drosophila melanogaster CG10305-P...   158   2e-39
AE014134-2930|AAF53666.1|  114|Drosophila melanogaster CG10305-P...   158   2e-39
AE014134-2929|AAN11004.1|  114|Drosophila melanogaster CG10305-P...   158   2e-39
AY061244-1|AAL28792.1|  664|Drosophila melanogaster LD18373p pro...    28   5.2  
AE014298-1641|AAF48061.1|  664|Drosophila melanogaster CG11696-P...    28   5.2  
AY070900-1|AAL48522.1|  463|Drosophila melanogaster RE01590p pro...    27   9.0  
AE014134-1736|AAF52836.1|  463|Drosophila melanogaster CG13126-P...    27   9.0  

>X14247-1|CAA32463.1|  114|Drosophila melanogaster ribosomal protein
           S31 protein.
          Length = 114

 Score =  158 bits (384), Expect = 2e-39
 Identities = 72/88 (81%), Positives = 78/88 (88%)
 Frame = +1

Query: 4   RKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMF 183
           +KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++  +
Sbjct: 3   KKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSY 62

Query: 184 QLPKLYAKLHYCVSCAIHSKVVRKDRRK 267
            LPKLYAKLHYCVSCAIHSKVVR   R+
Sbjct: 63  VLPKLYAKLHYCVSCAIHSKVVRNRSRE 90



 Score = 35.9 bits (79), Expect = 0.019
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +3

Query: 249 QERSKKDRRIRTPPKSNFPRDMSR 320
           + RS++ RRIRTPP  +FP+DM+R
Sbjct: 85  RNRSREARRIRTPPLRSFPKDMAR 108


>X13625-1|CAB38441.1|  114|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for putative ribosomal
           protein S31. ).
          Length = 114

 Score =  158 bits (384), Expect = 2e-39
 Identities = 72/88 (81%), Positives = 78/88 (88%)
 Frame = +1

Query: 4   RKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMF 183
           +KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++  +
Sbjct: 3   KKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSY 62

Query: 184 QLPKLYAKLHYCVSCAIHSKVVRKDRRK 267
            LPKLYAKLHYCVSCAIHSKVVR   R+
Sbjct: 63  VLPKLYAKLHYCVSCAIHSKVVRNRSRE 90



 Score = 35.9 bits (79), Expect = 0.019
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +3

Query: 249 QERSKKDRRIRTPPKSNFPRDMSR 320
           + RS++ RRIRTPP  +FP+DM+R
Sbjct: 85  RNRSREARRIRTPPLRSFPKDMAR 108


>AY069761-1|AAL39906.1|  114|Drosophila melanogaster RE01079p
           protein.
          Length = 114

 Score =  158 bits (384), Expect = 2e-39
 Identities = 72/88 (81%), Positives = 78/88 (88%)
 Frame = +1

Query: 4   RKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMF 183
           +KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++  +
Sbjct: 3   KKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSY 62

Query: 184 QLPKLYAKLHYCVSCAIHSKVVRKDRRK 267
            LPKLYAKLHYCVSCAIHSKVVR   R+
Sbjct: 63  VLPKLYAKLHYCVSCAIHSKVVRNRSRE 90



 Score = 35.9 bits (79), Expect = 0.019
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +3

Query: 249 QERSKKDRRIRTPPKSNFPRDMSR 320
           + RS++ RRIRTPP  +FP+DM+R
Sbjct: 85  RNRSREARRIRTPPLRSFPKDMAR 108


>AE014134-2931|AAN11005.1|  114|Drosophila melanogaster CG10305-PC,
           isoform C protein.
          Length = 114

 Score =  158 bits (384), Expect = 2e-39
 Identities = 72/88 (81%), Positives = 78/88 (88%)
 Frame = +1

Query: 4   RKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMF 183
           +KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++  +
Sbjct: 3   KKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSY 62

Query: 184 QLPKLYAKLHYCVSCAIHSKVVRKDRRK 267
            LPKLYAKLHYCVSCAIHSKVVR   R+
Sbjct: 63  VLPKLYAKLHYCVSCAIHSKVVRNRSRE 90



 Score = 35.9 bits (79), Expect = 0.019
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +3

Query: 249 QERSKKDRRIRTPPKSNFPRDMSR 320
           + RS++ RRIRTPP  +FP+DM+R
Sbjct: 85  RNRSREARRIRTPPLRSFPKDMAR 108


>AE014134-2930|AAF53666.1|  114|Drosophila melanogaster CG10305-PB,
           isoform B protein.
          Length = 114

 Score =  158 bits (384), Expect = 2e-39
 Identities = 72/88 (81%), Positives = 78/88 (88%)
 Frame = +1

Query: 4   RKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMF 183
           +KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++  +
Sbjct: 3   KKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSY 62

Query: 184 QLPKLYAKLHYCVSCAIHSKVVRKDRRK 267
            LPKLYAKLHYCVSCAIHSKVVR   R+
Sbjct: 63  VLPKLYAKLHYCVSCAIHSKVVRNRSRE 90



 Score = 35.9 bits (79), Expect = 0.019
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +3

Query: 249 QERSKKDRRIRTPPKSNFPRDMSR 320
           + RS++ RRIRTPP  +FP+DM+R
Sbjct: 85  RNRSREARRIRTPPLRSFPKDMAR 108


>AE014134-2929|AAN11004.1|  114|Drosophila melanogaster CG10305-PA,
           isoform A protein.
          Length = 114

 Score =  158 bits (384), Expect = 2e-39
 Identities = 72/88 (81%), Positives = 78/88 (88%)
 Frame = +1

Query: 4   RKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMF 183
           +KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++  +
Sbjct: 3   KKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSY 62

Query: 184 QLPKLYAKLHYCVSCAIHSKVVRKDRRK 267
            LPKLYAKLHYCVSCAIHSKVVR   R+
Sbjct: 63  VLPKLYAKLHYCVSCAIHSKVVRNRSRE 90



 Score = 35.9 bits (79), Expect = 0.019
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +3

Query: 249 QERSKKDRRIRTPPKSNFPRDMSR 320
           + RS++ RRIRTPP  +FP+DM+R
Sbjct: 85  RNRSREARRIRTPPLRSFPKDMAR 108


>AY061244-1|AAL28792.1|  664|Drosophila melanogaster LD18373p
           protein.
          Length = 664

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 25  RAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRN 126
           +A H  G V  V+CT C R +  +++++K + R+
Sbjct: 465 KALHPDGPVAEVQCTLCGRWLRDERSLRKHLARH 498


>AE014298-1641|AAF48061.1|  664|Drosophila melanogaster CG11696-PA
           protein.
          Length = 664

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 25  RAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRN 126
           +A H  G V  V+CT C R +  +++++K + R+
Sbjct: 465 KALHPDGPVAEVQCTLCGRWLRDERSLRKHLARH 498


>AY070900-1|AAL48522.1|  463|Drosophila melanogaster RE01590p
           protein.
          Length = 463

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 85  RTARSLCISRL*RDHVHAWRVLHYGAYE 2
           R  R L I++     ++AW+ + YGAYE
Sbjct: 131 RRKRELEINKRLGQRIYAWKRIEYGAYE 158


>AE014134-1736|AAF52836.1|  463|Drosophila melanogaster CG13126-PA
           protein.
          Length = 463

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 85  RTARSLCISRL*RDHVHAWRVLHYGAYE 2
           R  R L I++     ++AW+ + YGAYE
Sbjct: 131 RRKRELEINKRLGQRIYAWKRIEYGAYE 158


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,527,069
Number of Sequences: 53049
Number of extensions: 321723
Number of successful extensions: 1056
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1128794130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)