Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30950
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   142   6e-35
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    33   0.098
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    33   0.098
AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical ...    27   3.7  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  142 bits (345), Expect = 6e-35
 Identities = 64/87 (73%), Positives = 70/87 (80%)
 Frame = +1

Query: 7   KRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQ 186
           KRRN GR K  RGHV  +RCTNC RC PKDKAIKKFV+RNIVEAAAVRDI DAS Y  + 
Sbjct: 4   KRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYA 63

Query: 187 LPKLYAKLHYCVSCAIHSKVVRKDRRK 267
           LPKLY KLHYC++CAIHSKVVR   R+
Sbjct: 64  LPKLYHKLHYCIACAIHSKVVRNRSRE 90


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 32.7 bits (71), Expect = 0.098
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = +1

Query: 1   ARKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPM 180
           A KR+    A H   H+K ++C NC+     +K+++  +IR+  E A   ++  A     
Sbjct: 66  AYKRKKNLDA-HMALHLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSIC 124

Query: 181 FQL-PKLYAKLHYCVSCAIHSKVVRKDR-RKTEESVLLPRVTSLGT 312
            +L P    K H    C    K++ K R  K  +   LP   +L T
Sbjct: 125 KELFPSTSVKTHEWY-CKNREKIIEKQRVSKILKVQSLPSSPALST 169


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 32.7 bits (71), Expect = 0.098
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = +1

Query: 1   ARKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPM 180
           A KR+    A H   H+K ++C NC+     +K+++  +IR+  E A   ++  A     
Sbjct: 184 AYKRKKNLDA-HMALHLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSIC 242

Query: 181 FQL-PKLYAKLHYCVSCAIHSKVVRKDR-RKTEESVLLPRVTSLGT 312
            +L P    K H    C    K++ K R  K  +   LP   +L T
Sbjct: 243 KELFPSTSVKTHEWY-CKNREKIIEKQRVSKILKVQSLPSSPALST 287


>AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical
           protein Y39H10A.2 protein.
          Length = 740

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 284 STDSSVFLRSFLTTLLWMAHDTQ*WSLAYNLGSWNIGY 171
           S D+  F+ +FL + LW     + W+   + G W + Y
Sbjct: 351 SVDTFFFISAFLLSFLWFKQLEKQWNALLSPGGWLMFY 388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,248,602
Number of Sequences: 27780
Number of extensions: 156108
Number of successful extensions: 428
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)