Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30946
(583 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 108 7e-25
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 56 5e-09
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 54 2e-08
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 48 1e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 46 4e-06
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 46 5e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 45 7e-06
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 42 7e-05
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 40 2e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 40 3e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 40 3e-04
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 39 6e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 39 6e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.001
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 37 0.002
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 37 0.002
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 36 0.003
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.006
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 33 0.023
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 32 0.053
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.21
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 29 0.65
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 29 0.65
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 28 0.87
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 2.6
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 27 2.6
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 26 3.5
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 3.5
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 25 8.1
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 108 bits (259), Expect = 7e-25
Identities = 49/73 (67%), Positives = 58/73 (79%)
Frame = +1
Query: 289 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 468
ASLYVG+L +TEAMLFE F++ GPV SIRVCRD +TRRSLGYAYVNF D E+ALD
Sbjct: 80 ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139
Query: 469 TMNFDIIKGRPIR 507
+N+ +IKGRP R
Sbjct: 140 ELNYTLIKGRPCR 152
Score = 43.2 bits (97), Expect = 3e-05
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +3
Query: 510 MWSQRDPSLRKSGVGNVFIK 569
MWSQRDPSLRK G GNVFIK
Sbjct: 154 MWSQRDPSLRKMGTGNVFIK 173
Score = 38.3 bits (85), Expect = 8e-04
Identities = 18/71 (25%), Positives = 39/71 (54%)
Frame = +1
Query: 292 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 471
++Y+ +L ++ITE + F G + S+ + +D + G+ +VN+ A++A+D
Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDE 320
Query: 472 MNFDIIKGRPI 504
+N KG+ +
Sbjct: 321 LNDKEYKGKKL 331
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 55.6 bits (128), Expect = 5e-09
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Frame = +1
Query: 289 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCR-DMITRRSLGYAYVNFQQPTDAERAL 465
A+++VG+L +TE++L+ F G ++S+ + R + RS YA+V F +P DA+ A+
Sbjct: 6 ATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRS--YAFVEFDEPEDAKEAM 63
Query: 466 DTMNFDIIKGRPIRTCGPNVILPC---ANPELGM 558
+ MN+ I+ R IR N L A P++ M
Sbjct: 64 ENMNYSILCDRCIRVSPANFALSAEETAVPDIAM 97
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 54.0 bits (124), Expect = 2e-08
Identities = 25/73 (34%), Positives = 42/73 (57%)
Frame = +1
Query: 289 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 468
A++Y+G+L +T+++LFE AGPV++I + RD + G+ + F D E A
Sbjct: 11 ATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQ 70
Query: 469 TMNFDIIKGRPIR 507
+N + G+PIR
Sbjct: 71 ILNQVKLFGKPIR 83
Score = 44.8 bits (101), Expect = 9e-06
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +1
Query: 289 ASLYVGDLHSDITEAMLFEKFSTAGPVLSI-RVCRDMITRRSLGYAYVNFQQPTDAERAL 465
A+L+VG+L + E +L++ FS G ++ +V RD RS GY +V++ A+ A+
Sbjct: 99 ANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDE-NGRSKGYGFVSYDSFETADAAI 157
Query: 466 DTMNFDIIKGRPI 504
+ MN + +PI
Sbjct: 158 EAMNNQFLMNKPI 170
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 48.0 bits (109), Expect = 1e-06
Identities = 30/78 (38%), Positives = 42/78 (53%)
Frame = +1
Query: 274 PSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDA 453
PS P + +VG+L D+TE L + F V SIR+ D +T RS G+ YV F+
Sbjct: 89 PSEPPFTAHVGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFGYVEFETADTL 146
Query: 454 ERALDTMNFDIIKGRPIR 507
AL D++ GRP+R
Sbjct: 147 SAALALSGEDLM-GRPVR 163
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 46.0 bits (104), Expect = 4e-06
Identities = 23/74 (31%), Positives = 42/74 (56%)
Frame = +1
Query: 283 PMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERA 462
P ++++ L D E+ + +F+ GP+ IRV R+ +T +S+GYA+V F++ D + A
Sbjct: 98 PYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVA 157
Query: 463 LDTMNFDIIKGRPI 504
++ GR I
Sbjct: 158 YKASAGLMLNGRRI 171
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 45.6 bits (103), Expect = 5e-06
Identities = 19/66 (28%), Positives = 37/66 (56%)
Frame = +1
Query: 280 YPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAER 459
Y +L++G+L +TEA + + ++T G + +++ R+ T + GY +V F P +A
Sbjct: 90 YQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASS 149
Query: 460 ALDTMN 477
A+ N
Sbjct: 150 AMSMNN 155
Score = 41.5 bits (93), Expect = 9e-05
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 292 SLYVGDLHSDITEAMLFEKFSTA-GPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 468
S++VGDL ++ E ++ F++ S ++ D T S GY +V F D + AL
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALA 246
Query: 469 TMNFDIIKGRPIR 507
M I RPIR
Sbjct: 247 EMQGQICGDRPIR 259
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 45.2 bits (102), Expect = 7e-06
Identities = 27/77 (35%), Positives = 40/77 (51%)
Frame = +1
Query: 277 SYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAE 456
S P +++VG+L + TE L F G + SIR+ D + R G+ YV F A+
Sbjct: 362 SEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAK 421
Query: 457 RALDTMNFDIIKGRPIR 507
+ ++ MN I GRP R
Sbjct: 422 KCVE-MNGHFIAGRPCR 437
Score = 44.0 bits (99), Expect = 2e-05
Identities = 24/80 (30%), Positives = 40/80 (50%)
Frame = +1
Query: 265 PGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQP 444
P S +++VG L ++ + L ++F G ++ RV D + RS GY YV+F+ P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 445 TDAERALDTMNFDIIKGRPI 504
A+ A+ I GR +
Sbjct: 315 EAAKAAVAANGTKEIDGRMV 334
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 41.9 bits (94), Expect = 7e-05
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +1
Query: 292 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERAL 465
+++V L + +T L++ F AGPV ++ RD I+ RS G AYV F + A+
Sbjct: 241 TVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI 298
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 40.3 bits (90), Expect = 2e-04
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +1
Query: 283 PMASLYVGDLHSDITEAMLFEKFSTAGP-VLSIRVCRDMITRRSLGYAYVNFQQPTDAER 459
P S++VGDL ++ LF F + P S ++ D +T S Y +V F + +
Sbjct: 180 PEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQH 239
Query: 460 ALDTMNFDIIKGRPIR 507
AL M + +GRP+R
Sbjct: 240 ALMHMQGYLCQGRPLR 255
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 39.9 bits (89), Expect = 3e-04
Identities = 23/94 (24%), Positives = 44/94 (46%)
Frame = +1
Query: 226 MFL*NCIK*HKMNPGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITR 405
MF+ ++ ++ P ++VG+L + E L+ F G + +R+ RD T
Sbjct: 249 MFMDRHLRVDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTN 308
Query: 406 RSLGYAYVNFQQPTDAERALDTMNFDIIKGRPIR 507
G+AY+ F+ ++AL + +GR +R
Sbjct: 309 LGKGFAYIQFKDTMGVDKALLLNEKKMPEGRTLR 342
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 39.9 bits (89), Expect = 3e-04
Identities = 23/68 (33%), Positives = 35/68 (51%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
LYVG L E + FS GPVL +R+ R+ T S YA++ F+ A +TM
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 475 NFDIIKGR 498
+ ++ G+
Sbjct: 167 HNYLLYGK 174
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 38.7 bits (86), Expect = 6e-04
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQP-TDAERALDT 471
L+VG+L D + L F AG V S+R+ D + R GYA+V F P TD
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALK 153
Query: 472 MNFDIIKGRPI 504
+ I K R I
Sbjct: 154 FHHTIYKERKI 164
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 38.7 bits (86), Expect = 6e-04
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +1
Query: 283 PMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERA 462
P +YVG++ ++ E + + F +GPV S ++ D + + GY + + P A A
Sbjct: 3 PSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASA 62
Query: 463 LDTMN 477
+ +N
Sbjct: 63 VRNLN 67
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +1
Query: 292 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 468
+++V +L + TE L+ F GP+ ++ +D T RSLG ++ F+ D + L+
Sbjct: 278 TVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
Score = 34.3 bits (75), Expect = 0.013
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +1
Query: 289 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 468
++L+V +L + L FS GP+ V + T + GY +V F DA+RA
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 469 TMNFDIIKGRPIR 507
+ + GR +R
Sbjct: 65 ELKNKKLHGRILR 77
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 406 RSLGYAYVNFQQPTDAERALDTMNFDIIKGRPI 504
R G+A+V + AE A++++N I GRPI
Sbjct: 146 RMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPI 178
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 36.7 bits (81), Expect = 0.002
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +1
Query: 259 MNPGPPSYPM---ASLYVGDLHSDIT--EAMLFEKFSTAGPVLSIRVCRDMITRRSLGYA 423
+ P P S P +L+V +L +I L E FS G + S + T S GY
Sbjct: 406 VTPTPTSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYG 465
Query: 424 YVNFQQPTDAERALDTMN 477
+V+F P +A +A++T+N
Sbjct: 466 FVSFSHPFEAVQAINTLN 483
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 36.7 bits (81), Expect = 0.002
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
++VG++ D++E + E F+ GPV + ++ D T GY + F A+ +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 475 NFDIIKGRPIRTCGPN 522
N + R IR P+
Sbjct: 69 NNSELGPRKIRVEFPS 84
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 36.3 bits (80), Expect = 0.003
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Frame = +1
Query: 262 NPGPPSYPM--ASLYVGDLHSDIT--EAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYV 429
+P P+ P+ ++LYV +L + ++ L + FS G +LS + + S GY +V
Sbjct: 371 SPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFV 430
Query: 430 NFQQPTDAERALDTMNFDIIKGRPIRTC 513
F+Q A RA DT+N ++ + I C
Sbjct: 431 AFRQIEAAVRAKDTLNGMMVGKKRIFVC 458
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 265 PGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSI 378
PG +++YVG++ S +++ + + FS G V SI
Sbjct: 9 PGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 35.5 bits (78), Expect = 0.006
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
+ V +H + TE + + F+ GPV ++ + D T GYA + + A++A+D
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 475 NFDII 489
N ++
Sbjct: 72 NLSLL 76
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 33.5 bits (73), Expect = 0.023
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -3
Query: 374 DRTGPAVENFSNNMASVISECKSPTYRDAIG*LGGPGFILCYLIQFHRNINRLQMQNFTF 195
D T P+ N + AS+ EC A+ L P + YLI FHR + +N F
Sbjct: 289 DLTPPSY-NIAKTFASIYQECLVGLVTKAVS-LDTPAAVYLYLINFHREYRKFFEENAPF 346
Query: 194 SL 189
S+
Sbjct: 347 SV 348
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 32.3 bits (70), Expect = 0.053
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +1
Query: 337 LFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNFDIIKGRPI 504
+F +FS G V + VC D + +G YV F+ A+ A+D +N RP+
Sbjct: 80 MFCEFSKYGEVEQLVVC-DNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPV 134
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 30.3 bits (65), Expect = 0.21
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +1
Query: 283 PMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERA 462
P +L+VG+L S ++ + FS G V SIR M++ + A++NF A+
Sbjct: 585 PTHALWVGNLPSGVSATTVATTFSAYGTVSSIR----MLSHKH--SAFLNFDSVETAKHV 638
Query: 463 LDTMN 477
L+ +N
Sbjct: 639 LEELN 643
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 28.7 bits (61), Expect = 0.65
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
L++ +L E L F G + + + D T G+AY++F DA RA +
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 475 NFDIIKGR 498
+ +GR
Sbjct: 385 DAKPFQGR 392
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 28.7 bits (61), Expect = 0.65
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSL-GYAYVNFQQPTDA-ERALD 468
+YVG L S I + L +FS G V ++ + ++ +AY+NF+ D ++
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCKS 66
Query: 469 TMNFDIIKGRPIR 507
++ KG +R
Sbjct: 67 YLSNATFKGSKLR 79
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 28.3 bits (60), Expect = 0.87
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 415 GYAYVNFQQPTDAERALDTMNFDIIKGRPIR 507
G A+ NF +P +A+ + T+N I GR +R
Sbjct: 244 GLAFANFYRPEEAQVVVQTLNGYEINGRRLR 274
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 26.6 bits (56), Expect = 2.6
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +1
Query: 280 YPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAER 459
Y LYV ++ + E + F G V S+R+ + + GY + Q DAE
Sbjct: 754 YEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQ--DAEN 811
Query: 460 AL 465
AL
Sbjct: 812 AL 813
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 26.6 bits (56), Expect = 2.6
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +1
Query: 283 PMASLYVGDLHSDITEAMLFE----KFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTD 450
P +LY+ ++ I ML F + G V+ ++ + T R G A+V F +
Sbjct: 24 PSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARK---TLRMRGQAFVVFDNLEN 80
Query: 451 AERALDTMNFDIIKGRPI 504
A RAL + + G+P+
Sbjct: 81 ASRALKDLQGYPLYGKPM 98
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 388 RDMITRRSLGYA-YVNFQQPTDAERALDTMNFDIIKGRPIRTCGPNVILPCANPE 549
+D + R ++ A Y +F A+ LDT FD++ G VI+P E
Sbjct: 115 KDFMHRNNIPTAVYKSFSNYDHAKSFLDTCTFDVVIKADGLAAGKGVIIPKTKKE 169
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 304 GDLHSDITEAMLFEKFSTAGPVLSIRV-CRDMITRRS 411
G H+++ LF+K TA PVL R+ +D RRS
Sbjct: 610 GKEHANLALDTLFKKLPTAAPVLLKRIKTKDQEWRRS 646
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/61 (26%), Positives = 34/61 (55%)
Frame = +1
Query: 292 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 471
++++G+L + ITE + E GP+ I++ +T R++ A+V+F A +A+
Sbjct: 207 NVFLGNLPNGITEDEIREDLEPFGPIDQIKI----VTERNI--AFVHFLNIAAAIKAVQE 260
Query: 472 M 474
+
Sbjct: 261 L 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,301,848
Number of Sequences: 5004
Number of extensions: 44148
Number of successful extensions: 129
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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