Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30946
(583 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 136 1e-32
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 136 1e-32
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 131 4e-31
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 131 4e-31
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 131 4e-31
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 58 5e-09
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 58 5e-09
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 56 2e-08
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 56 2e-08
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 56 2e-08
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 56 2e-08
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 55 3e-08
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 54 6e-08
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 52 2e-07
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 52 2e-07
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 48 4e-06
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 47 8e-06
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 47 1e-05
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 47 1e-05
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 47 1e-05
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 46 3e-05
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 46 3e-05
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 44 8e-05
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 44 8e-05
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 44 8e-05
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 44 1e-04
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 44 1e-04
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 44 1e-04
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 43 1e-04
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 42 2e-04
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 40 0.001
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 38 0.004
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 38 0.004
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 37 0.012
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 37 0.012
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 37 0.012
AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical... 36 0.016
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 36 0.021
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 36 0.021
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 36 0.021
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 36 0.028
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 36 0.028
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 35 0.037
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 35 0.037
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 35 0.037
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 34 0.064
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 34 0.064
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 33 0.20
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 31 0.60
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 31 0.60
Z73102-7|CAA97420.1| 727|Caenorhabditis elegans Hypothetical pr... 30 1.0
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 30 1.4
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 30 1.4
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 30 1.4
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 30 1.4
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 30 1.4
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 30 1.4
U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical p... 29 2.4
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 29 2.4
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 29 2.4
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 29 2.4
U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 28 5.6
AC006663-2|AAF39900.2| 603|Caenorhabditis elegans Hypothetical ... 27 7.4
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z74031-14|CAD66220.1| 187|Caenorhabditis elegans Hypothetical p... 27 9.7
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 136 bits (328), Expect = 1e-32
Identities = 62/81 (76%), Positives = 70/81 (86%)
Frame = +1
Query: 265 PGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQP 444
P +Y MASLY+GDLH D++EAMLFEKFS AGPVLSIRVCRD +R SLGYAYVNFQQP
Sbjct: 49 PPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQP 108
Query: 445 TDAERALDTMNFDIIKGRPIR 507
DAERALDTMNF++I GRP+R
Sbjct: 109 ADAERALDTMNFEVIHGRPMR 129
Score = 37.9 bits (84), Expect = 0.005
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +3
Query: 510 MWSQRDPSLRKSGVGNVFIK 569
MWSQRDP+ R++G GN+FIK
Sbjct: 131 MWSQRDPAARRAGNGNIFIK 150
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 136 bits (328), Expect = 1e-32
Identities = 62/81 (76%), Positives = 70/81 (86%)
Frame = +1
Query: 265 PGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQP 444
P +Y MASLY+GDLH D++EAMLFEKFS AGPVLSIRVCRD +R SLGYAYVNFQQP
Sbjct: 49 PPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQP 108
Query: 445 TDAERALDTMNFDIIKGRPIR 507
DAERALDTMNF++I GRP+R
Sbjct: 109 ADAERALDTMNFEVIHGRPMR 129
Score = 37.9 bits (84), Expect = 0.005
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +3
Query: 510 MWSQRDPSLRKSGVGNVFIK 569
MWSQRDP+ R++G GN+FIK
Sbjct: 131 MWSQRDPAARRAGNGNIFIK 150
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 131 bits (316), Expect = 4e-31
Identities = 59/77 (76%), Positives = 67/77 (87%)
Frame = +1
Query: 277 SYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAE 456
SY MASLYVGDLH D+ E++LFEKFS AGPVLSIRVCRD TR SLGYAYVNFQQP DAE
Sbjct: 28 SYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAE 87
Query: 457 RALDTMNFDIIKGRPIR 507
RA+DTMNF+ + G+P+R
Sbjct: 88 RAMDTMNFEALHGKPMR 104
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +3
Query: 510 MWSQRDPSLRKSGVGNVFIKKKKK 581
MWSQRDP++R+SG GN+FIK K
Sbjct: 106 MWSQRDPAMRRSGAGNIFIKNLDK 129
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 131 bits (316), Expect = 4e-31
Identities = 59/77 (76%), Positives = 67/77 (87%)
Frame = +1
Query: 277 SYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAE 456
SY MASLYVGDLH D+ E++LFEKFS AGPVLSIRVCRD TR SLGYAYVNFQQP DAE
Sbjct: 28 SYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAE 87
Query: 457 RALDTMNFDIIKGRPIR 507
RA+DTMNF+ + G+P+R
Sbjct: 88 RAMDTMNFEALHGKPMR 104
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +3
Query: 510 MWSQRDPSLRKSGVGNVFIKKKKK 581
MWSQRDP++R+SG GN+FIK K
Sbjct: 106 MWSQRDPAMRRSGAGNIFIKNLDK 129
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 131 bits (316), Expect = 4e-31
Identities = 59/77 (76%), Positives = 67/77 (87%)
Frame = +1
Query: 277 SYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAE 456
SY MASLYVGDLH D+ E++LFEKFS AGPVLSIRVCRD TR SLGYAYVNFQQP DAE
Sbjct: 28 SYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAE 87
Query: 457 RALDTMNFDIIKGRPIR 507
RA+DTMNF+ + G+P+R
Sbjct: 88 RAMDTMNFEALHGKPMR 104
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +3
Query: 510 MWSQRDPSLRKSGVGNVFIKKKKK 581
MWSQRDP++R+SG GN+FIK K
Sbjct: 106 MWSQRDPAMRRSGAGNIFIKNLDK 129
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 58.0 bits (134), Expect = 5e-09
Identities = 25/73 (34%), Positives = 45/73 (61%)
Frame = +1
Query: 289 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 468
A++YVG L ++E++L+E AGPV+S+ + +D +T G+ +V F DA+ A+
Sbjct: 13 ATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIK 72
Query: 469 TMNFDIIKGRPIR 507
+N + G+PI+
Sbjct: 73 ILNMIKLYGKPIK 85
Score = 50.4 bits (115), Expect = 9e-07
Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = +1
Query: 289 ASLYVGDLHSDITEAMLFEKFSTAGPVLSI-RVCRDMITRRSLGYAYVNFQQPTDAERAL 465
A+++VG+L ++ E +L++ FS G +L + ++ RD+ + S G+A++NF ++ AL
Sbjct: 100 ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTAL 159
Query: 466 DTMNFDIIKGRPI 504
+ MN + R I
Sbjct: 160 EAMNGQFLCNRAI 172
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 58.0 bits (134), Expect = 5e-09
Identities = 25/73 (34%), Positives = 45/73 (61%)
Frame = +1
Query: 289 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 468
A++YVG L ++E++L+E AGPV+S+ + +D +T G+ +V F DA+ A+
Sbjct: 23 ATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIK 82
Query: 469 TMNFDIIKGRPIR 507
+N + G+PI+
Sbjct: 83 ILNMIKLYGKPIK 95
Score = 50.4 bits (115), Expect = 9e-07
Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = +1
Query: 289 ASLYVGDLHSDITEAMLFEKFSTAGPVLSI-RVCRDMITRRSLGYAYVNFQQPTDAERAL 465
A+++VG+L ++ E +L++ FS G +L + ++ RD+ + S G+A++NF ++ AL
Sbjct: 110 ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTAL 169
Query: 466 DTMNFDIIKGRPI 504
+ MN + R I
Sbjct: 170 EAMNGQFLCNRAI 182
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 55.6 bits (128), Expect = 2e-08
Identities = 28/72 (38%), Positives = 42/72 (58%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
++VGDL S++ L E F G V +V RD T +S GY +V++ + +AERA++ M
Sbjct: 24 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 83
Query: 475 NFDIIKGRPIRT 510
N + R IRT
Sbjct: 84 NGQWLGRRTIRT 95
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 55.6 bits (128), Expect = 2e-08
Identities = 28/72 (38%), Positives = 42/72 (58%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
++VGDL S++ L E F G V +V RD T +S GY +V++ + +AERA++ M
Sbjct: 34 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 93
Query: 475 NFDIIKGRPIRT 510
N + R IRT
Sbjct: 94 NGQWLGRRTIRT 105
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 55.6 bits (128), Expect = 2e-08
Identities = 28/72 (38%), Positives = 42/72 (58%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
++VGDL S++ L E F G V +V RD T +S GY +V++ + +AERA++ M
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 475 NFDIIKGRPIRT 510
N + R IRT
Sbjct: 197 NGQWLGRRTIRT 208
Score = 38.7 bits (86), Expect = 0.003
Identities = 24/72 (33%), Positives = 37/72 (51%)
Frame = +1
Query: 292 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 471
+LYVG+L S +TE + F+ G V +V D + YA+V F A +AL T
Sbjct: 47 TLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---GSNDPYAFVEFSDHGQASQALQT 103
Query: 472 MNFDIIKGRPIR 507
MN ++ R ++
Sbjct: 104 MNKRLLLDREMK 115
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 55.6 bits (128), Expect = 2e-08
Identities = 28/72 (38%), Positives = 42/72 (58%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
++VGDL S++ L E F G V +V RD T +S GY +V++ + +AERA++ M
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 164
Query: 475 NFDIIKGRPIRT 510
N + R IRT
Sbjct: 165 NGQWLGRRTIRT 176
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 292 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRD 393
+LYVG+L S +TE + F+ G V +V D
Sbjct: 47 TLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD 80
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 55.2 bits (127), Expect = 3e-08
Identities = 29/72 (40%), Positives = 41/72 (56%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
++VGDL S+I L E F G V ++ RD T + GY +V++ + DAERA+D M
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEM 193
Query: 475 NFDIIKGRPIRT 510
N + R IRT
Sbjct: 194 NGAWLGRRTIRT 205
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 54.4 bits (125), Expect = 6e-08
Identities = 27/72 (37%), Positives = 42/72 (58%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
++VGDL D++ +L F+ G V +V RD+ T++S GY +V+F +AE A+ M
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 196
Query: 475 NFDIIKGRPIRT 510
N I R +RT
Sbjct: 197 NGKWIGKRAVRT 208
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/72 (31%), Positives = 41/72 (56%)
Frame = +1
Query: 292 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 471
S+YVG++ T+A L + FST G + +R+ + T+R YA+V +++ A +A+
Sbjct: 238 SVYVGNISQQTTDADLRDLFSTYGDIAEVRIFK---TQR---YAFVRYEKKECATKAIME 291
Query: 472 MNFDIIKGRPIR 507
MN + G +R
Sbjct: 292 MNGKEMAGNQVR 303
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 52.4 bits (120), Expect = 2e-07
Identities = 26/72 (36%), Positives = 41/72 (56%)
Frame = +1
Query: 292 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 471
S+YVG+ TE L FS+ G + ++R+ D T R G+A++ F + A+RA++
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 472 MNFDIIKGRPIR 507
MN GRP+R
Sbjct: 66 MNGAEFNGRPLR 77
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/83 (33%), Positives = 41/83 (49%)
Frame = +1
Query: 259 MNPGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQ 438
MN P +LYVG D+TE +L F G V++I + D + + G+ +V F
Sbjct: 1 MNTNFPHNRKRTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFD 60
Query: 439 QPTDAERALDTMNFDIIKGRPIR 507
DA A+D MN + G+ IR
Sbjct: 61 MAEDAAMAIDNMNESELFGKTIR 83
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/72 (34%), Positives = 41/72 (56%)
Frame = +1
Query: 292 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 471
S++VG++ D++E + FS AG VLSI++ D T + GY ++ F AE A+
Sbjct: 19 SVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRN 78
Query: 472 MNFDIIKGRPIR 507
+N + GR +R
Sbjct: 79 LNGYELSGRILR 90
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 47.2 bits (107), Expect = 8e-06
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = +1
Query: 292 SLYVGDLHSDITEAMLFEKFSTA-GPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERAL 465
+++VG+L +ITE L FS GPV ++R+ RD T + G+A+VNF+Q + AL
Sbjct: 247 AIFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVSLAL 305
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +1
Query: 286 MASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERAL 465
M+ +YVG + +I E ML F GP+ SI + D T +A+V ++ P A A
Sbjct: 101 MSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQ 160
Query: 466 DTMNFDIIKGRPIR 507
++MN ++ GR ++
Sbjct: 161 ESMNGQMLGGRNLK 174
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
+YV +H D++E L F G ++ ++ R R G+ Y+ F T A+ M
Sbjct: 209 VYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGM 268
Query: 475 NFDIIKGRPIR 507
N + G+ +R
Sbjct: 269 NMFDLGGQYLR 279
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +1
Query: 286 MASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERAL 465
M+ +YVG + +I E ML F GP+ SI + D T +A+V ++ P A A
Sbjct: 101 MSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQ 160
Query: 466 DTMNFDIIKGRPIR 507
++MN ++ GR ++
Sbjct: 161 ESMNGQMLGGRNLK 174
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
+YV +H D++E L F G ++ ++ R R G+ Y+ F T A+ M
Sbjct: 209 VYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGM 268
Query: 475 NFDIIKGRPIR 507
N + G+ +R
Sbjct: 269 NMFDLGGQYLR 279
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +1
Query: 286 MASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERAL 465
M+ +YVG + +I E ML F GP+ SI + D T +A+V ++ P A A
Sbjct: 101 MSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQ 160
Query: 466 DTMNFDIIKGRPIR 507
++MN ++ GR ++
Sbjct: 161 ESMNGQMLGGRNLK 174
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
+YV +H D++E L F G ++ ++ R R G+ Y+ F T A+ M
Sbjct: 209 VYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGM 268
Query: 475 NFDIIKGRPIR 507
N + G+ +R
Sbjct: 269 NMFDLGGQYLR 279
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +1
Query: 286 MASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERAL 465
+ SL + +L T L F G + + + RD +R+S G+ +V F + DAE AL
Sbjct: 18 LTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHAL 77
Query: 466 DTMNFDIIKGRPIR 507
D + ++ GR +R
Sbjct: 78 DRTDGKLVDGRELR 91
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +1
Query: 286 MASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERAL 465
+ SL + +L T L F G + + + RD +R+S G+ +V F + DAE AL
Sbjct: 18 LTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHAL 77
Query: 466 DTMNFDIIKGRPIR 507
D + ++ GR +R
Sbjct: 78 DRTDGKLVDGRELR 91
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 44.0 bits (99), Expect = 8e-05
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +1
Query: 286 MASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERAL 465
+ ++VG L S+ T+ ++ E +S G + I V RD T+RS G+ +V F T+ + A+
Sbjct: 22 LRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM 81
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 44.0 bits (99), Expect = 8e-05
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +1
Query: 286 MASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERAL 465
+ ++VG L S+ T+ ++ E +S G + I V RD T+RS G+ +V F T+ + A+
Sbjct: 22 LRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM 81
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 44.0 bits (99), Expect = 8e-05
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +1
Query: 286 MASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERAL 465
+ ++VG L S+ T+ ++ E +S G + I V RD T+RS G+ +V F T+ + A+
Sbjct: 22 LRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM 81
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/62 (32%), Positives = 37/62 (59%)
Frame = +1
Query: 292 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 471
+L + L +T+ + F++ G + S ++ RD +T +SLGY +VN+ + DA RA+ +
Sbjct: 43 NLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSS 102
Query: 472 MN 477
N
Sbjct: 103 FN 104
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = +1
Query: 271 PPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTD 450
PP + L++G L D T+ L FS GPV+ V RD T+ S G+ +V F
Sbjct: 45 PPQ--LRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFS 102
Query: 451 AERALD 468
AE A++
Sbjct: 103 AESAMN 108
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = +1
Query: 271 PPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTD 450
PP + L++G L D T+ L FS GPV+ V RD T+ S G+ +V F
Sbjct: 65 PPQ--LRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFS 122
Query: 451 AERALD 468
AE A++
Sbjct: 123 AESAMN 128
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = +1
Query: 271 PPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTD 450
PP + L++G L D T+ L FS GPV+ V RD T+ S G+ +V F
Sbjct: 66 PPQ--LRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFS 123
Query: 451 AERALD 468
AE A++
Sbjct: 124 AESAMN 129
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/71 (28%), Positives = 39/71 (54%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
++ GDL +++++ +L + F +V R+ T +S GY +V+F+ D RA+ M
Sbjct: 205 VFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREM 264
Query: 475 NFDIIKGRPIR 507
+ + RPI+
Sbjct: 265 DGKYVGNRPIK 275
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +3
Query: 510 MWSQRDPSLRKSGVGNVFIKKKKK 581
MWSQRDP++R+SG GN+FIK K
Sbjct: 43 MWSQRDPAMRRSGAGNIFIKNLDK 66
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = +1
Query: 439 QPTDAERALDTMNFDIIKGRPIR 507
QP DAERA+DTMNF+ + G+P+R
Sbjct: 19 QPADAERAMDTMNFEALHGKPMR 41
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/71 (28%), Positives = 38/71 (53%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
++V ++H + TE + +KFS G + +I + D T GYA V ++ +A A+D
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQS 116
Query: 475 NFDIIKGRPIR 507
N + G+ ++
Sbjct: 117 NDTDLLGQNVK 127
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/70 (31%), Positives = 34/70 (48%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
L+V ++ E L F GPV+ + + + R S G+ +V Q P DA+RA
Sbjct: 102 LHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFN--ERGSKGFGFVTMQNPDDADRARAEF 159
Query: 475 NFDIIKGRPI 504
N I+GR +
Sbjct: 160 NGTTIEGRRV 169
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/70 (31%), Positives = 34/70 (48%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
L+V ++ E L F GPV+ + + + R S G+ +V Q P DA+RA
Sbjct: 102 LHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFN--ERGSKGFGFVTMQNPDDADRARAEF 159
Query: 475 NFDIIKGRPI 504
N I+GR +
Sbjct: 160 NGTTIEGRRV 169
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 36.7 bits (81), Expect = 0.012
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
+++G L T L + F G V V RD T+R+ G+ ++ F P+ ++ L+
Sbjct: 47 MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNR 106
Query: 475 NFDI 486
++
Sbjct: 107 EHEL 110
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 36.7 bits (81), Expect = 0.012
Identities = 23/68 (33%), Positives = 32/68 (47%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
++VG L ++ L E F G + V D T++S GY +V + AERA
Sbjct: 37 IFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDP 96
Query: 475 NFDIIKGR 498
N II GR
Sbjct: 97 N-PIIDGR 103
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 36.7 bits (81), Expect = 0.012
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
+++G L T L + F G V V RD T+R+ G+ ++ F P+ ++ L+
Sbjct: 47 MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNR 106
Query: 475 NFDI 486
++
Sbjct: 107 EHEL 110
>AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical
protein Y37D8A.21 protein.
Length = 282
Score = 36.3 bits (80), Expect = 0.016
Identities = 22/74 (29%), Positives = 37/74 (50%)
Frame = +1
Query: 256 KMNPGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNF 435
K P PP ++YV + ++ E +L E F AGPV+ + + RD + + +A V F
Sbjct: 4 KPTPSPPEE--RTIYVANFSEEVDEELLEELFIQAGPVVKV-ILRD-VRDSNAKFALVEF 59
Query: 436 QQPTDAERALDTMN 477
+ A++ MN
Sbjct: 60 EDELSVLFAIELMN 73
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 35.9 bits (79), Expect = 0.021
Identities = 24/69 (34%), Positives = 34/69 (49%)
Frame = +1
Query: 289 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 468
A +YVG L SD T L E F G R+ + + RR G+A+V + DAE A+
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFG-----RIRKVWVARRPPGFAFVEYDDVRDAEDAVR 57
Query: 469 TMNFDIIKG 495
++ I G
Sbjct: 58 ALDGSRICG 66
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 35.9 bits (79), Expect = 0.021
Identities = 24/69 (34%), Positives = 34/69 (49%)
Frame = +1
Query: 289 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 468
A +YVG L SD T L E F G R+ + + RR G+A+V + DAE A+
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFG-----RIRKVWVARRPPGFAFVEYDDVRDAEDAVR 57
Query: 469 TMNFDIIKG 495
++ I G
Sbjct: 58 ALDGSRICG 66
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 35.9 bits (79), Expect = 0.021
Identities = 24/69 (34%), Positives = 34/69 (49%)
Frame = +1
Query: 289 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 468
A +YVG L SD T L E F G R+ + + RR G+A+V + DAE A+
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFG-----RIRKVWVARRPPGFAFVEYDDVRDAEDAVR 57
Query: 469 TMNFDIIKG 495
++ I G
Sbjct: 58 ALDGSRICG 66
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 35.5 bits (78), Expect = 0.028
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 349 FSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNFDIIKGRPI 504
F GPV+ + + + R S G+ +V Q P DA+RA N I+GR +
Sbjct: 2 FEKVGPVVDVEIIFN--ERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRV 51
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 35.5 bits (78), Expect = 0.028
Identities = 21/50 (42%), Positives = 25/50 (50%)
Frame = +1
Query: 328 EAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMN 477
E L F G VL IRV R+ T G+AYV F AE A ++MN
Sbjct: 45 EKELLGYFRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAVAEIAAESMN 94
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 35.1 bits (77), Expect = 0.037
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +1
Query: 319 DITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNFDIIKGR 498
D E + E G V I VC + I +G YV F + DAE+A + +N G+
Sbjct: 89 DFYEEVFVEMERKYGEVEEINVCEN-IGEHMVGNVYVKFMKEEDAEKAKNDLNNRWFNGQ 147
Query: 499 PI 504
PI
Sbjct: 148 PI 149
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 35.1 bits (77), Expect = 0.037
Identities = 21/69 (30%), Positives = 37/69 (53%)
Frame = +1
Query: 301 VGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNF 480
V +LH I E M+ + F + G + I + D R + G+A + F+ DA+++ + +N
Sbjct: 131 VENLHPKIDEKMIRDIFESFGRIEKIDLEVDS-NRENRGFATITFRNADDAQKSCEQLNN 189
Query: 481 DIIKGRPIR 507
+ GR IR
Sbjct: 190 FELAGRCIR 198
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 35.1 bits (77), Expect = 0.037
Identities = 21/69 (30%), Positives = 37/69 (53%)
Frame = +1
Query: 301 VGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNF 480
V +LH I E M+ + F + G + I + D R + G+A + F+ DA+++ + +N
Sbjct: 276 VENLHPKIDEKMIRDIFESFGRIEKIDLEVDS-NRENRGFATITFRNADDAQKSCEQLNN 334
Query: 481 DIIKGRPIR 507
+ GR IR
Sbjct: 335 FELAGRCIR 343
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 34.3 bits (75), Expect = 0.064
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +1
Query: 337 LFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNFDIIKGRPI 504
+FEKF G V + + + R S G+ +V ++P DAERA ++ +I+GR I
Sbjct: 172 MFEKF---GVVSDVEIIFN--ERGSKGFGFVTMERPQDAERARQELHGSMIEGRKI 222
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 34.3 bits (75), Expect = 0.064
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +1
Query: 337 LFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNFDIIKGRPI 504
+FEKF G V + + + R S G+ +V ++P DAERA ++ +I+GR I
Sbjct: 172 MFEKF---GVVSDVEIIFN--ERGSKGFGFVTMERPQDAERARQELHGSMIEGRKI 222
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 32.7 bits (71), Expect = 0.20
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = +1
Query: 292 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVC---RDMITRRSLGYAYVNFQQPTDAERA 462
++YV ++ +TE L F + GP+ ++++ + RR A+V F D +R
Sbjct: 201 NVYVSNIPHSVTEDDLLFTFGSFGPLAALKILYPRSEEERRRPHICAFVAFMSRADVDRF 260
Query: 463 LDTMNFDIIKGRPIR 507
+ + I++ PIR
Sbjct: 261 MAEVRVIIVRNEPIR 275
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 31.1 bits (67), Expect = 0.60
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
++VG + ++ L F+ G V +V D RS G+A+V F + AL
Sbjct: 31 IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAR 90
Query: 475 NFDIIKGRPI 504
IKG+ +
Sbjct: 91 E-QTIKGKSV 99
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 31.1 bits (67), Expect = 0.60
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
++VG + ++ L F+ G V +V D RS G+A+V F + AL
Sbjct: 31 IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAR 90
Query: 475 NFDIIKGRPI 504
IKG+ +
Sbjct: 91 E-QTIKGKSV 99
>Z73102-7|CAA97420.1| 727|Caenorhabditis elegans Hypothetical
protein B0035.6 protein.
Length = 727
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 269 VHQVIRWHLCMLEIYTLI*PRPCCLKNFRLLG 364
V + +RWHL + TL+ CLKNF + G
Sbjct: 153 VQEELRWHLLFSPVTTLLDIFTRCLKNFEITG 184
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
+++G L + +TE + E + GP+ + + D S GYA+ + PT ++A+ +
Sbjct: 293 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDS-QGNSKGYAFAEYLDPTLTDQAIAGL 351
Query: 475 N 477
N
Sbjct: 352 N 352
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = +1
Query: 271 PPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTD 450
P S+ +YV ++ E L F G VLS+ + + R S G+ +V
Sbjct: 45 PASFTDNRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTN--DRGSKGFGFVTLDSIES 102
Query: 451 AERALDTMNFDIIKGRPI 504
E+A ++ ++GR I
Sbjct: 103 CEKARAALHESHVQGRII 120
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
+++G L + +TE + E + GP+ + + D S GYA+ + PT ++A+ +
Sbjct: 293 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDS-QGNSKGYAFAEYLDPTLTDQAIAGL 351
Query: 475 N 477
N
Sbjct: 352 N 352
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
+++G L + +TE + E + GP+ + + D S GYA+ + PT ++A+ +
Sbjct: 268 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDS-QGNSKGYAFAEYLDPTLTDQAIAGL 326
Query: 475 N 477
N
Sbjct: 327 N 327
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
+++G L + +TE + E + GP+ + + D S GYA+ + PT ++A+ +
Sbjct: 271 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDS-QGNSKGYAFAEYLDPTLTDQAIAGL 329
Query: 475 N 477
N
Sbjct: 330 N 330
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = +1
Query: 271 PPSYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTD 450
P S+ +YV ++ E L F G VLS+ + + R S G+ +V
Sbjct: 45 PASFTDNRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTN--DRGSKGFGFVTLDSIES 102
Query: 451 AERALDTMNFDIIKGRPI 504
E+A ++ ++GR I
Sbjct: 103 CEKARAALHESHVQGRII 120
>U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical
protein C44B7.2b protein.
Length = 339
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 262 NPGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPV 369
+P P+ P ++V +LH +TEA L E S GPV
Sbjct: 24 DPTNPN-PSIVVHVRNLHQKVTEADLLEALSNFGPV 58
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 262 NPGPPSYPMASLYVGDLHSDITEAMLFEKFSTAGPV 369
+P P+ P ++V +LH +TEA L E S GPV
Sbjct: 24 DPTNPN-PSIVVHVRNLHQKVTEADLLEALSNFGPV 58
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 283 PMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRR-SLGYAYVNFQQPTDAER 459
P + + +L ++ + L E FS G + ++ + D GY YV + DAE+
Sbjct: 131 PAKRVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEK 190
Query: 460 ALDTMNFDIIKGRPI 504
++ M+ I G +
Sbjct: 191 SIKHMDGGQIDGMAV 205
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +1
Query: 295 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 474
LY+ +L IT ++E F G V IRV TR G A+V ++ DA+ A + +
Sbjct: 21 LYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETR---GTAFVVYEDIFDAKTACEHL 77
Query: 475 N 477
+
Sbjct: 78 S 78
>U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical
protein C18A3.5c protein.
Length = 103
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 292 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQ 438
+LYVG+L S +TE + F+ G V +V D LGY N Q
Sbjct: 47 TLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----ELGYLATNAQ 90
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical
protein F54E4.1 protein.
Length = 2948
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 386 QTRIDRTGPAVENFSNNMASVISECKSPTYRD 291
Q+RI + SN M+SVI +SPT+RD
Sbjct: 845 QSRIVMADDDDSSESNPMSSVIDRSRSPTFRD 876
>AC006663-2|AAF39900.2| 603|Caenorhabditis elegans Hypothetical
protein H24K24.4 protein.
Length = 603
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 403 RRSLGYAYVNFQQPTDAERALDTMN 477
R YAYV F+ P DA++A++ ++
Sbjct: 60 RHMSDYAYVTFETPEDAQKAINLVD 84
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 27.1 bits (57), Expect = 9.7
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +1
Query: 337 LFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNFDIIKGR 498
LF+K+ G V ++V D T G+A V F P A A ++ + KGR
Sbjct: 298 LFKKY---GEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVFKGR 348
>Z74031-14|CAD66220.1| 187|Caenorhabditis elegans Hypothetical
protein F32D8.13 protein.
Length = 187
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +1
Query: 316 SDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNFDII 489
SD +E FS ++IR+ R+ GY +V ++E LD F+++
Sbjct: 103 SDCRRRTDYEYFSANYRTVTIRIETSEEDRKQRGYQFVEGVDDAESECGLDDYKFNLV 160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,800,016
Number of Sequences: 27780
Number of extensions: 248431
Number of successful extensions: 595
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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