Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30945
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy... 149 3e-37
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy... 35 0.008
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch... 29 0.42
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ... 29 0.55
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb... 29 0.55
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 28 1.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.9
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 26 3.9
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch... 26 5.1
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 5.1
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 25 6.8
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 25 6.8
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 25 9.0
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 25 9.0
>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 482
Score = 149 bits (361), Expect = 3e-37
Identities = 74/121 (61%), Positives = 81/121 (66%)
Frame = +1
Query: 256 MVEVSGALNTIAVSLMKIANDIRLLASGPRCGLAELMLPENEPGSSIMPGKVNPTQCEAL 435
+VE+SGALN IA SLMKIANDIR L SGPRCGL EL+LP NEPGSSIMPGKVNPTQCEAL
Sbjct: 291 IVEMSGALNVIACSLMKIANDIRQLGSGPRCGLGELILPANEPGSSIMPGKVNPTQCEAL 350
Query: 436 TMVAAQVMGNHVACTVGGSNGHFEXXXXXXXXXXXXXGPYDSSATAARPFNKNCAVGIKA 615
TMV AQVMGNH TV G++GH E A F +C VGI+
Sbjct: 351 TMVCAQVMGNHATITVAGASGHCELNVFKPLLAKNILSSIRLLGDACESFTDHCVVGIEP 410
Query: 616 N 618
N
Sbjct: 411 N 411
Score = 61.3 bits (142), Expect = 1e-10
Identities = 31/66 (46%), Positives = 38/66 (57%)
Frame = +2
Query: 59 LSYGVERVCATLPRLHYXXXXXXXXXXXXNTRXGFAEKCAAEIAALTGIPFETAPNKFEA 238
+ YG+ER+ LPRL NT GF K A +++ LT I F+TAPNKFEA
Sbjct: 225 VGYGIERINNALPRLCLLAQGGTAVGTGLNTFEGFDVKVAEKVSKLTNIEFKTAPNKFEA 284
Query: 239 LACHDA 256
LA HDA
Sbjct: 285 LAAHDA 290
Score = 31.1 bits (67), Expect = 0.14
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 3 LMDAVPLTLGQEFSGY 50
+ DA PL+LGQEFSGY
Sbjct: 206 MQDATPLSLGQEFSGY 221
>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 482
Score = 35.1 bits (77), Expect = 0.008
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +1
Query: 214 DGAEQVRGAGVPRRM-VEVSGALNTIAVSLMKIANDIRLLASGPRCGLAELMLPENEPGS 390
D V G R++ ++V L + + KIA DIRLLA+ E + GS
Sbjct: 230 DNVYPVTGQTYDRKIDIDVLQPLASFGATAHKIATDIRLLANLKE---VEEPFEAGQIGS 286
Query: 391 SIMPGKVNPTQCEALTMVAAQVM 459
S M K NP +CE + A +M
Sbjct: 287 SAMAYKRNPMRCERICSQARYIM 309
>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
Mud1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 29.5 bits (63), Expect = 0.42
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +1
Query: 334 SGPRCGLAELMLPENEPGSSIMPGKVNPTQCEALTMVAAQVM 459
SG R G E + P NE GSS P VNP L AQ++
Sbjct: 264 SGTRLGTKESVAPNNE-GSSNPPSLVNPPTDPGLNSKIAQLV 304
>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 461
Score = 29.1 bits (62), Expect = 0.55
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 286 IAVSLMKIANDIRLLASGPRCGLAELMLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGN 465
+ + + + A D+ ++ S G L GSSIMP K NP E L + +V+G+
Sbjct: 250 VMLHISRFAEDL-IIYSSSEFGFVTLS-DAYSTGSSIMPQKKNPDSLELLRGKSGRVLGD 307
Query: 466 HVACTV 483
+ +
Sbjct: 308 MIGLMI 313
>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 29.1 bits (62), Expect = 0.55
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1
Query: 385 GSSIMPGKVNPTQCEALTMVAAQVMGN 465
GSSIMP K NP E L + +V GN
Sbjct: 280 GSSIMPQKKNPDSLELLRGKSGRVFGN 306
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 572 AVADESYGPQHVGHDHGLEHVGSK 501
AV D Y P V +DH L HV SK
Sbjct: 588 AVCDNPYKPSQVIYDHLLGHVDSK 611
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 3.9
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Frame = -3
Query: 491 LPPTVHATWLPITCAATIVSASHCVGFTLPGIIEDPGSFSGNISSASPQRGPEASSRMSF 312
+PPT ++T P+T T+ S T P P S S +S+SP S S
Sbjct: 291 IPPTGNST-TPVT--PTVPPTSTSSTSTPP----PPASTSSTGTSSSPLPSTSTSCTTST 343
Query: 311 AI---FMSDTAMVLSAPETSTMRRGTPAP 234
+I S T + + P TST TP P
Sbjct: 344 SIPPTGNSTTPVTPTVPPTSTSSTSTPPP 372
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 500 TSSQRVQAHDRVQRAAVHTTHRRRLPGLSTRTAPWASRLTNA 625
T++Q +R++RAA H P S A SR TN+
Sbjct: 606 TAAQTASVWNRIERAAAHDGPSLSAPSSSINLANITSRPTNS 647
>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = -3
Query: 440 IVSASHCVGFTLPGIIEDPGSFSGNISSASPQRGPEASSRMSFAIFMSDTAMVL 279
I+ H F PGI+ G + +P + P++S+ + ++ + MVL
Sbjct: 475 IILNDHMDDFASPGIVNAFGLSPSPYNFIAPGKRPQSSAVPTILVYNGEVEMVL 528
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 416 GFTLPGIIEDPGSFSGNISSASPQRGPEASSRMSF 312
GF +P +I D S S ++SS+ + S+ +SF
Sbjct: 317 GFNVPSLISDDPSVSSSLSSSVASLSLQNSNILSF 351
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 146 NTRXGFAEKCAAEIAALTGIPFETAPNKFEAL 241
+T A A E A++ G+P PN F+ L
Sbjct: 458 STSTNMASSDALETASMIGVPSAMPPNSFDML 489
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 522 PMIVSNVLRSIRLIGDGCQAFQQ 590
P I SN +R L+G G AFQQ
Sbjct: 257 PQIFSNEIRYRTLLGMGVMAFQQ 279
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/65 (23%), Positives = 25/65 (38%)
Frame = +1
Query: 418 TQCEALTMVAAQVMGNHVACTVGGSNGHFEXXXXXXXXXXXXXGPYDSSATAARPFNKNC 597
T + + AAQ++ V +GG G +D ++ A + C
Sbjct: 233 TSTDIVVENAAQLLSQFVFSVLGGHKRLSSRNHNSQPLVCILVGSHDHASAAVAAGRRLC 292
Query: 598 AVGIK 612
A+GIK
Sbjct: 293 AIGIK 297
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -3
Query: 389 DPGSFSGNISSASPQRGPEASSRMSFAIFMSDTAMVLSAPE 267
DP + S + PQ PE S + +F+S A + E
Sbjct: 76 DPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDE 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.131 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,816,051
Number of Sequences: 5004
Number of extensions: 29940
Number of successful extensions: 117
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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