Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30945
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0935 - 12517564-12517650,12517995-12518060,12518156-125181... 165 2e-41
03_05_0600 + 26021863-26022469,26022562-26022992 32 0.43
06_01_0810 + 6111962-6112507 29 2.3
02_05_1138 + 34379697-34380902 29 2.3
11_01_0547 + 4314858-4315033,4315898-4316075,4317240-4317419 29 3.0
04_03_0045 + 10107994-10108076,10108289-10108529,10108571-10108789 29 3.0
06_03_0693 - 23572499-23572618,23572854-23572991,23573855-23575066 29 4.0
04_03_0068 - 10631827-10631947,10632037-10632112,10632152-106330... 29 4.0
09_06_0134 + 21065104-21065965,21066732-21066961,21067618-210678... 28 5.3
06_01_0845 - 6430419-6431195 28 5.3
02_04_0129 + 20020388-20021215 28 5.3
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054... 28 7.0
02_05_0999 + 33405982-33408279,33408356-33408466,33408551-334087... 28 7.0
12_02_1211 - 27033927-27034029,27034130-27034273,27034358-270344... 27 9.2
08_02_1262 - 25692905-25693220,25693480-25693750,25693817-25694381 27 9.2
01_06_0323 - 28476459-28476915,28477075-28477525,28477623-284779... 27 9.2
>03_02_0935 -
12517564-12517650,12517995-12518060,12518156-12518185,
12518279-12518377,12518578-12518673,12519221-12519271,
12519358-12519424,12519516-12519610,12519928-12520009,
12520609-12520658,12520741-12520791,12521749-12521832,
12521918-12522028,12522276-12522425,12522858-12522975,
12523118-12523290
Length = 469
Score = 165 bits (402), Expect = 2e-41
Identities = 83/123 (67%), Positives = 88/123 (71%)
Frame = +1
Query: 259 VEVSGALNTIAVSLMKIANDIRLLASGPRCGLAELMLPENEPGSSIMPGKVNPTQCEALT 438
VE SGA+NTI+ SLMKIANDIRLL SGPRCGL EL+LPENEPGSSIMPGKVNPTQCEALT
Sbjct: 280 VESSGAVNTISASLMKIANDIRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALT 339
Query: 439 MVAAQVMGNHVACTVGGSNGHFEXXXXXXXXXXXXXGPYDSSATAARPFNKNCAVGIKAN 618
MV AQVMGNHV TVGGSNGHFE A+ F KNC GI+AN
Sbjct: 340 MVCAQVMGNHVGVTVGGSNGHFELNVFKPMIAAGLLRSLRLLGDASVSFEKNCVRGIQAN 399
Query: 619 ECR 627
R
Sbjct: 400 HKR 402
Score = 64.1 bits (149), Expect = 9e-11
Identities = 30/67 (44%), Positives = 40/67 (59%)
Frame = +2
Query: 59 LSYGVERVCATLPRLHYXXXXXXXXXXXXNTRXGFAEKCAAEIAALTGIPFETAPNKFEA 238
+ YG++R+ TLPR++ NT+ GF K AA +A T +PF TA NKFEA
Sbjct: 213 VKYGIDRIVCTLPRMYQLAQGGTAVGTGLNTKKGFDVKIAAAVAEETELPFVTAENKFEA 272
Query: 239 LACHDAW 259
LA HDA+
Sbjct: 273 LAAHDAF 279
>03_05_0600 + 26021863-26022469,26022562-26022992
Length = 345
Score = 31.9 bits (69), Expect = 0.43
Identities = 25/98 (25%), Positives = 42/98 (42%)
Frame = -2
Query: 360 LGESTARPGGQQSDVVRDLHERHGDGVERAGDLHHASWHASASNLFGAVSNGIPVSAAIS 181
+G + + G ++++R++++ G+ VER + A L GA S+G A +
Sbjct: 127 MGRTERKEKGLPANLLREIYDAMGEVVERR-PMSSGGGGGGAVFLAGASSSGSGGLADVP 185
Query: 180 AAHFSAKPILVLRPVPTAVPPSAR*CRRGSVAHTRSTP 67
A A P+ L P P + C GS R P
Sbjct: 186 AMAMQASPLAQLLPRPLEATAN---CSSGSPERKRRRP 220
>06_01_0810 + 6111962-6112507
Length = 181
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 264 LHHASWHASASNLFGAVSNGIPVSAAISAAHFSAKP 157
LHH SWH A A S + AA +AA + +P
Sbjct: 142 LHHGSWHRKADGCSLAHSKAVSEKAAAAAAAPAKRP 177
>02_05_1138 + 34379697-34380902
Length = 401
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = -3
Query: 422 CVGFTLPGIIEDPGSFSGNISSASPQRGPEASSRMSFAIFMSDTAMVLSAPETSTMRRGT 243
CVG T G G F+ + SS+SP A + A TA++L P++S + R +
Sbjct: 186 CVGVTWHGRFHVVGGFAESTSSSSP--AAAADDEAAAAPPGRATALLLLLPQSSALERSS 243
Query: 242 PAPRTCS 222
C+
Sbjct: 244 AEVFDCA 250
>11_01_0547 + 4314858-4315033,4315898-4316075,4317240-4317419
Length = 177
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 620 SLALMPTAQFLLKGLAAVADESYGPQHVGHDHGLEHVGSKC 498
S+ +MP LL +AA A SY P D G+ S C
Sbjct: 15 SVLIMPLLMLLLAAMAASAASSYQPDDQMSDFGMCFFASSC 55
>04_03_0045 + 10107994-10108076,10108289-10108529,10108571-10108789
Length = 180
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +1
Query: 451 QVMGNHVACTVGGSNGHFEXXXXXXXXXXXXXGPYDSSATAARPFNKNCAVG 606
+ +G+H+AC V G++GHF ++ RP ++C +G
Sbjct: 129 KALGSHMACEVCGNDGHFGTNCPKTCENVKAHEQQQRVSSTRRPRMEHCFMG 180
>06_03_0693 - 23572499-23572618,23572854-23572991,23573855-23575066
Length = 489
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 258 GGGLRRAQHHR-RVAHEDRERHPTAGLRAALWTRRADVARER 380
GGGLR HR ++A DRE +A AA W R + E+
Sbjct: 292 GGGLRLGVLHRHKLALWDREEDGSAAAAAARWVWRVAIDLEQ 333
>04_03_0068 -
10631827-10631947,10632037-10632112,10632152-10633021,
10650975-10651599
Length = 563
Score = 28.7 bits (61), Expect = 4.0
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Frame = -2
Query: 393 RGSGFVLGQHQLGESTARPGGQQSDVVRDLHERHGDGVERAGDLHHASWHASASNLFGAV 214
+G G V G H G + G SDV +D D V+ A +HHA + S L +
Sbjct: 128 QGDG-VHGVHGDGAQGLQGGNLNSDVAQDFFNNFQDRVDYA--VHHALINQSGV-LVNTL 183
Query: 213 SNGI-PVSAAISAAHFSAKPILVLRPVPTAVPPSAR 109
SN + ++ A H +A P+ + P A S R
Sbjct: 184 SNMMKSIADGSIAGHQAAGPVYLQGENPEAFFRSVR 219
>09_06_0134 +
21065104-21065965,21066732-21066961,21067618-21067841,
21067929-21068781
Length = 722
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -2
Query: 255 ASWHASASNLFGAVSNGIPVSAAISAAHFSAKPILVLRPVPTAVPPSA 112
A HA+ + +V++ + V A H + PIL+ P PT PP++
Sbjct: 43 AGAHAAYAAALRSVADAVDVFVA---RHTAPAPILITLPTPTGSPPAS 87
>06_01_0845 - 6430419-6431195
Length = 258
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -2
Query: 285 GVERAGDLHHASWHASASNLFGAVSNGIPVSAAISAAHFSAKPILVLRPVPTAVPP 118
GVE A A+ ASA + ++ G P A +SA ++ P L L P +PP
Sbjct: 178 GVEEAS----AAERASARRVIPIIT-GAPAPAMLSAVGYAFSPSLSLHPAVAPLPP 228
>02_04_0129 + 20020388-20021215
Length = 275
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = -2
Query: 195 SAAISAAHFSAKPILVLRPVPTAVPPSA 112
+AA +AA A+P +L PVP+A+PP+A
Sbjct: 180 AAAFAAALGPARPS-ILSPVPSALPPAA 206
>08_02_0880 +
22203440-22204324,22204763-22204876,22204964-22205455,
22205646-22205819,22206589-22206978,22209927-22210022,
22210645-22210760,22210872-22211042,22211126-22211285,
22211388-22211573,22211665-22211793,22211918-22211996,
22212159-22212268
Length = 1033
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -3
Query: 503 KCPLLPPTVHATWLPITCAATIVSASHCVG 414
K P++ + T LP++C ATI++ + +G
Sbjct: 535 KAPVIQKSPRPTGLPLSCGATIIATAIALG 564
>02_05_0999 +
33405982-33408279,33408356-33408466,33408551-33408703,
33408870-33409033,33409113-33409210,33409296-33409474,
33409588-33409675,33410285-33410451
Length = 1085
Score = 27.9 bits (59), Expect = 7.0
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = -2
Query: 381 FVLGQHQLGESTARPGGQQSDVVRDLHERHGDGVERAGDLHHASWHASASNLFGAVSN-- 208
F+ QH E+ A D R+ R+ D + GD+ S S LFG N
Sbjct: 122 FLFSQHLDDEAAAAAVHYNGDE-RETERRYVDALNSLGDVRTPSSPVSVEQLFGIGGNES 180
Query: 207 GIPVSAAI 184
GIP A +
Sbjct: 181 GIPDIAGL 188
>12_02_1211 -
27033927-27034029,27034130-27034273,27034358-27034439,
27034536-27034690,27034865-27034945,27035397-27035458,
27035966-27036034,27036807-27036867,27037560-27037816
Length = 337
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 243 ASASNLFGAVSNGIPVSAAISAAHFSAKPILVLRPVPTAVPPSA 112
AS + A S+ IP S++ S++ S P+ AVPPS+
Sbjct: 11 ASPPEVAKAFSSSIPASSSSSSSSSSTTTAAASLPLRAAVPPSS 54
>08_02_1262 - 25692905-25693220,25693480-25693750,25693817-25694381
Length = 383
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/78 (25%), Positives = 30/78 (38%)
Frame = -2
Query: 372 GQHQLGESTARPGGQQSDVVRDLHERHGDGVERAGDLHHASWHASASNLFGAVSNGIPVS 193
GQ+ G ST P G + + + AG +W S+ A +P S
Sbjct: 297 GQNGAGGSTPPPAGNNGAGIISYQPPPTEDINGAGSADQPAWMTMPSS---ASKRMMPSS 353
Query: 192 AAISAAHFSAKPILVLRP 139
+A S H +L+L P
Sbjct: 354 SAASTRHNQLWSLLLLLP 371
>01_06_0323 -
28476459-28476915,28477075-28477525,28477623-28477904,
28478089-28478118,28480560-28481433
Length = 697
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -3
Query: 611 LMPTAQFLLKGLAAVADESYGPQHVGHDHGLEHVGSKCPLLPPTVHATW 465
+ P + +L+GL V D + D G + G PL P TVHA W
Sbjct: 642 MRPPIKEVLEGLKGVQDLCV----MEKDGGKDKKGPDPPLSPDTVHAQW 686
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.131 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,333,177
Number of Sequences: 37544
Number of extensions: 289093
Number of successful extensions: 1281
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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