Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30945
(628 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025459-6|AAN63405.1| 328|Caenorhabditis elegans Fumarase prot... 157 5e-39
AF025459-5|AAB70982.1| 501|Caenorhabditis elegans Fumarase prot... 157 5e-39
Z69360-6|CAA93282.1| 599|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z37983-5|CAA86059.2| 405|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF067211-1|AAC16986.1| 455|Caenorhabditis elegans Hypothetical ... 29 3.6
Z71266-5|CAD56593.1| 370|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z71266-4|CAA95843.1| 478|Caenorhabditis elegans Hypothetical pr... 28 4.8
AL032626-2|CAA21539.1| 571|Caenorhabditis elegans Hypothetical ... 28 6.3
Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical pr... 27 8.3
AL117206-8|CAB60449.2| 328|Caenorhabditis elegans Hypothetical ... 27 8.3
>AF025459-6|AAN63405.1| 328|Caenorhabditis elegans Fumarase protein
1, isoform b protein.
Length = 328
Score = 157 bits (382), Expect = 5e-39
Identities = 79/122 (64%), Positives = 86/122 (70%)
Frame = +1
Query: 256 MVEVSGALNTIAVSLMKIANDIRLLASGPRCGLAELMLPENEPGSSIMPGKVNPTQCEAL 435
+VEV GALNT+AVS MKI NDIR L SGPRCGL EL LPENEPGSSIMPGKVNPTQCEA+
Sbjct: 139 LVEVHGALNTVAVSFMKIGNDIRFLGSGPRCGLGELSLPENEPGSSIMPGKVNPTQCEAI 198
Query: 436 TMVAAQVMGNHVACTVGGSNGHFEXXXXXXXXXXXXXGPYDSSATAARPFNKNCAVGIKA 615
TMVAAQVMGN VA +VGGSNGHFE A +A F +C GI A
Sbjct: 199 TMVAAQVMGNQVAVSVGGSNGHFELNVFKPLIVRNVLQSTRLLADSAVSFTDHCVDGIVA 258
Query: 616 NE 621
N+
Sbjct: 259 NK 260
Score = 72.5 bits (170), Expect = 2e-13
Identities = 36/66 (54%), Positives = 42/66 (63%)
Frame = +2
Query: 59 LSYGVERVCATLPRLHYXXXXXXXXXXXXNTRXGFAEKCAAEIAALTGIPFETAPNKFEA 238
L + RV +TLPRL+ NTR GFAEK AA ++ LTG+PF TAPNKFEA
Sbjct: 73 LDNSIARVESTLPRLYQLAAGGTAVGTGLNTRKGFAEKVAATVSELTGLPFVTAPNKFEA 132
Query: 239 LACHDA 256
LA HDA
Sbjct: 133 LAAHDA 138
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3
Query: 9 DAVPLTLGQEFSGY 50
DAVPLTLGQEFS Y
Sbjct: 56 DAVPLTLGQEFSAY 69
>AF025459-5|AAB70982.1| 501|Caenorhabditis elegans Fumarase protein
1, isoform a protein.
Length = 501
Score = 157 bits (382), Expect = 5e-39
Identities = 79/122 (64%), Positives = 86/122 (70%)
Frame = +1
Query: 256 MVEVSGALNTIAVSLMKIANDIRLLASGPRCGLAELMLPENEPGSSIMPGKVNPTQCEAL 435
+VEV GALNT+AVS MKI NDIR L SGPRCGL EL LPENEPGSSIMPGKVNPTQCEA+
Sbjct: 312 LVEVHGALNTVAVSFMKIGNDIRFLGSGPRCGLGELSLPENEPGSSIMPGKVNPTQCEAI 371
Query: 436 TMVAAQVMGNHVACTVGGSNGHFEXXXXXXXXXXXXXGPYDSSATAARPFNKNCAVGIKA 615
TMVAAQVMGN VA +VGGSNGHFE A +A F +C GI A
Sbjct: 372 TMVAAQVMGNQVAVSVGGSNGHFELNVFKPLIVRNVLQSTRLLADSAVSFTDHCVDGIVA 431
Query: 616 NE 621
N+
Sbjct: 432 NK 433
Score = 72.5 bits (170), Expect = 2e-13
Identities = 36/66 (54%), Positives = 42/66 (63%)
Frame = +2
Query: 59 LSYGVERVCATLPRLHYXXXXXXXXXXXXNTRXGFAEKCAAEIAALTGIPFETAPNKFEA 238
L + RV +TLPRL+ NTR GFAEK AA ++ LTG+PF TAPNKFEA
Sbjct: 246 LDNSIARVESTLPRLYQLAAGGTAVGTGLNTRKGFAEKVAATVSELTGLPFVTAPNKFEA 305
Query: 239 LACHDA 256
LA HDA
Sbjct: 306 LAAHDA 311
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3
Query: 9 DAVPLTLGQEFSGY 50
DAVPLTLGQEFS Y
Sbjct: 229 DAVPLTLGQEFSAY 242
>Z69360-6|CAA93282.1| 599|Caenorhabditis elegans Hypothetical
protein F25H8.6 protein.
Length = 599
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = -2
Query: 327 QSDVVRDLHERH-GDGVERAGDLHHASWHASASNLFGAVSNGIPVSAAISAAHFSAKPIL 151
++ ++R+++E+ +G+E + S S + A S+ +++ S++HFS P++
Sbjct: 193 RAKLLREMNEKVITNGIENTPIVKKESQTESQKSP-SASSSASDTASSASSSHFSTNPLI 251
Query: 150 VLRPVPTAVPPSA 112
L P P A+ P A
Sbjct: 252 GL-PAPVAIKPPA 263
>Z37983-5|CAA86059.2| 405|Caenorhabditis elegans Hypothetical
protein B0393.6 protein.
Length = 405
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -3
Query: 395 IEDPGSFSGNISSASPQRGPEASSRMSFAIFMSDTAMVLSAPETST 258
+E P S N++ P SSR SF +D+ +VLS P TS+
Sbjct: 268 VESPHSLPTNVAPRIPP-----SSRSSFTQHSNDSGVVLSTPPTSS 308
>AF067211-1|AAC16986.1| 455|Caenorhabditis elegans Hypothetical
protein B0205.10 protein.
Length = 455
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 353 SPQRGPEASSRMSFAIFMSDTAMVLSAPETSTMRRGTPAP 234
+PQ PE + A + +T V APET TPAP
Sbjct: 98 APQSAPEPTPDAPAAAPVQETPQVAPAPETPAPAPETPAP 137
>Z71266-5|CAD56593.1| 370|Caenorhabditis elegans Hypothetical
protein R06C7.5b protein.
Length = 370
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 274 ALNTIAVSLMKIANDIRLLASGPRCGLAELMLP--ENEPGSSIMPGKVNPTQCE 429
+L+ + + K+ DIR+L + EL+ P +++ GSS MP K NP + E
Sbjct: 250 SLSLLGAAAKKVCTDIRVLQA-----FGELLEPFEKDQIGSSAMPYKKNPMKSE 298
>Z71266-4|CAA95843.1| 478|Caenorhabditis elegans Hypothetical
protein R06C7.5a protein.
Length = 478
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 274 ALNTIAVSLMKIANDIRLLASGPRCGLAELMLP--ENEPGSSIMPGKVNPTQCE 429
+L+ + + K+ DIR+L + EL+ P +++ GSS MP K NP + E
Sbjct: 250 SLSLLGAAAKKVCTDIRVLQA-----FGELLEPFEKDQIGSSAMPYKKNPMKSE 298
>AL032626-2|CAA21539.1| 571|Caenorhabditis elegans Hypothetical
protein Y37D8A.2 protein.
Length = 571
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 247 PRRMVEVSGALNTIAVSLMKIANDIRLLASGPRCGLAELMLPENE 381
P M++++G L +A+ K N ++ + C +LP+NE
Sbjct: 179 PIFMIQIAGDLEDLAMKFKKPENPKKVFSGPGHCSALVKLLPKNE 223
>Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical
protein F10C2.4 protein.
Length = 1081
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 232 RGAGVPRRMVEVSGALNTIAVSLMKIANDIRLLASGP 342
RGA V+VSG+ + + M++ N + L+ GP
Sbjct: 170 RGADTKVPFVKVSGSTEALHKARMELKNGVNLMGKGP 206
>AL117206-8|CAB60449.2| 328|Caenorhabditis elegans Hypothetical
protein Y67A10A.8 protein.
Length = 328
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 176 AAEIAALTGIPFETAPNKFEALACHDAWW 262
AA + +T +P + P KF+ + C WW
Sbjct: 245 AAFMFYVTMVPEKLWPGKFDVVGCSHQWW 273
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.131 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,712,531
Number of Sequences: 27780
Number of extensions: 196791
Number of successful extensions: 778
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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