Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30905
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    29   0.77 
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    28   1.0  

>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 13/47 (27%), Positives = 29/47 (61%)
 Frame = -2

Query: 260 YEPIFWIYTVYISITFKVSTVVVRYNTKYEGLDWGSKLELTAIVRLR 120
           YE +F +   ++++T+ + T +   + KY+GL   +   LT+++R+R
Sbjct: 274 YEEVFTMLYDFVNVTWTLLTTLTP-DEKYDGLVGKAMAFLTSVIRIR 319


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1147

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 231  YSIYPKYGFIL-TLNGIEFVYYIFTSLLPDEHKFI-GISDK 347
            + ++ + G ++ TLNG++  + IF     D HKF+  ISDK
Sbjct: 1010 HDLHKQCGVLIDTLNGVKRGFGIFEKKFTDYHKFLENISDK 1050


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,740
Number of Sequences: 5004
Number of extensions: 52811
Number of successful extensions: 130
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)