Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30905
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0010 - 22137258-22137428,22137734-22137794,22137917-221379...    29   2.4  
11_06_0370 + 22768977-22769523,22769619-22770642,22770784-227711...    28   7.4  
08_02_0189 + 13984892-13984943,13985929-13986480,13986577-139867...    28   7.4  

>04_04_0010 -
           22137258-22137428,22137734-22137794,22137917-22137984,
           22138524-22138733,22138867-22138907,22139011-22139060,
           22139260-22139348,22139468-22139542,22139791-22139882,
           22140131-22140182,22140515-22140631,22141267-22141496,
           22141618-22141672,22141781-22141900
          Length = 476

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +3

Query: 255 FILTLNGIEFVYYIFTSLLPDEHKFIGISDKCAFRVTRFIVVVVSHLAVTLTLL 416
           FIL  N  EF Y+I+T      +    I D+  +RV+R ++ VV  +  + + L
Sbjct: 361 FILFQNAFEFAYFIWTMATFGFNSC--IMDRLPYRVSRIVICVVVQVLCSYSTL 412


>11_06_0370 +
           22768977-22769523,22769619-22770642,22770784-22771170,
           22771216-22771507
          Length = 749

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 286 TNSIPFNVSMNPYF 245
           T+ IPFNV+ NPYF
Sbjct: 181 TSGIPFNVARNPYF 194


>08_02_0189 +
           13984892-13984943,13985929-13986480,13986577-13986759,
           13986826-13987006,13987238-13987654,13987742-13988128,
           13988176-13988467
          Length = 687

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 286 TNSIPFNVSMNPYF 245
           T+ IPFNV+ NPYF
Sbjct: 200 TSGIPFNVARNPYF 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,890,329
Number of Sequences: 37544
Number of extensions: 270659
Number of successful extensions: 497
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)