Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30905
         (651 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065543-1|BAC05788.1|  324|Homo sapiens seven transmembrane hel...    30   6.2  
AB065452-1|BAC05714.1|  324|Homo sapiens seven transmembrane hel...    30   6.2  

>AB065543-1|BAC05788.1|  324|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 324

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 309 LPDEHKFIGISDKCAFRVTRFIV--VVVSHLAVTLTLLIFLTNYRH*SFTVILLIFIKKL 482
           +P E  F+G +D    RVT F+V  +V +   V   LLI L N    S  + +  F+  L
Sbjct: 8   MPTEFLFVGFTDYLPLRVTLFLVFLLVYTLTMVGNILLIILVNINS-SLQIPMYYFLSNL 66

Query: 483 S 485
           S
Sbjct: 67  S 67


>AB065452-1|BAC05714.1|  324|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 324

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 309 LPDEHKFIGISDKCAFRVTRFIV--VVVSHLAVTLTLLIFLTNYRH*SFTVILLIFIKKL 482
           +P E  F+G +D    RVT F+V  +V +   V   LLI L N    S  + +  F+  L
Sbjct: 8   MPTEFLFVGFTDYLPLRVTLFLVFLLVYTLTMVGNILLIILVNINS-SLQIPMYYFLSNL 66

Query: 483 S 485
           S
Sbjct: 67  S 67


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,250,826
Number of Sequences: 237096
Number of extensions: 1608521
Number of successful extensions: 2427
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2427
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)