Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30905
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80024-10|AAK18891.1|  297|Caenorhabditis elegans Serpentine rec...    29   3.8  
Z32673-1|CAA83585.1|  472|Caenorhabditis elegans transcription f...    28   6.6  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U41559-4|AAC24257.1|  413|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U80024-10|AAK18891.1|  297|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 11 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
 Frame = +3

Query: 285 VYYIFTSLLPDEHKFI-----GISDKCAFRVTRFIVVVVSHLAVTLTLLIFLTNYRH*SF 449
           +Y  FT    ++  FI      +    A R+T  + + +  +    T + F  NYRH   
Sbjct: 76  LYSYFTDRFKEQQVFIVYLGFPLQTTAAIRMTIAVAISIERVLAVFTPITF-HNYRHLCP 134

Query: 450 TVILLIFIKKLST 488
           TVI+LI    L T
Sbjct: 135 TVIVLILAISLGT 147


>Z32673-1|CAA83585.1|  472|Caenorhabditis elegans transcription
           factor protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 327 FIGISDKCAFRVTRFIVVVVSHLAVTLTLLIFLTNYRH*SFTVI 458
           F  I+  C   +++F+VV VS+   T+TL+ +L  +    F V+
Sbjct: 25  FHSITALCDHMLSKFVVVEVSNSNNTMTLVEYLVTHGFDKFAVV 68


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical
           protein F54B3.1b protein.
          Length = 3394

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +2

Query: 251 WVHTNIERN*VCLLHI--HVFTTRR 319
           WVHT  ER+ + L+H+   +FTT R
Sbjct: 588 WVHTQTERSLLNLIHVPFEMFTTER 612


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical
           protein F54B3.1a protein.
          Length = 3396

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +2

Query: 251 WVHTNIERN*VCLLHI--HVFTTRR 319
           WVHT  ER+ + L+H+   +FTT R
Sbjct: 588 WVHTQTERSLLNLIHVPFEMFTTER 612


>U41559-4|AAC24257.1|  413|Caenorhabditis elegans Hypothetical
           protein C26B2.1 protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 601 CKCGKFHTPPSRNFCKKGYK 542
           C CGKF T P   FC+  +K
Sbjct: 14  CTCGKFRTLPDLVFCRYCFK 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,897,557
Number of Sequences: 27780
Number of extensions: 279401
Number of successful extensions: 670
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)