Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30904
(309 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 34 0.006
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 25 2.6
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 25 2.6
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 25 3.4
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe... 25 3.4
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 3.4
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|... 24 4.5
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 24 4.5
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 24 5.9
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 23 7.9
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 23 7.9
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 23 7.9
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 23 7.9
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 23 7.9
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 23 7.9
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 33.9 bits (74), Expect = 0.006
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = -3
Query: 256 LPLGIPISPF*PGKPITPGLPGSPGKPCCPFAP 158
LP G+P +PF PG P P +PG PG P AP
Sbjct: 531 LPPGMP-APF-PGYPAVPAMPGIPGATAPPGAP 561
Score = 25.8 bits (54), Expect = 1.5
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 180 FPGEPGRPGVIGLPGQKGDMGMP 248
FPG P P + G+PG G P
Sbjct: 539 FPGYPAVPAMPGIPGATAPPGAP 561
Score = 24.2 bits (50), Expect = 4.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 223 PGKPITPGLPGSPGKP 176
PG P+ P +PG+PG P
Sbjct: 501 PGVPLPP-IPGAPGMP 515
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 2.6
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 67 LDYLVNQVKKVMQDPWGPLGSQVFLDYPVRLEQKDNKVSLE 189
L+ ++ K++ +Q+F DY V+ + K NK LE
Sbjct: 134 LNNFLHSSAKILDRALCDQSNQLFTDYTVKKKSKKNKSQLE 174
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.0 bits (52), Expect = 2.6
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 122 WGPRYSWITR*GWS 163
WGP SWIT GWS
Sbjct: 143 WGPLASWIT--GWS 154
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 24.6 bits (51), Expect = 3.4
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 12 PGPQGLHGEKGDQGLVGRPGLP-GQPGQ 92
P + ++ G++GL G+PG P G PG+
Sbjct: 62 PEQRKIYDAYGEEGLNGQPGGPGGGPGE 89
>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 511
Score = 24.6 bits (51), Expect = 3.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 242 SHITFLTRQTNNTWPTRFSRETLLSFC 162
++I + ++ WPTR E + SFC
Sbjct: 428 TYIMLYLKPPSSPWPTRPPTEIITSFC 454
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 24.6 bits (51), Expect = 3.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 98 TFLTWLTR*SRSTHQSLISLFSM*ALRTW 12
T +TWL TH L+ +FSM L+ W
Sbjct: 646 TIITWLMH---PTHLLLVVMFSMLVLQWW 671
>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 24.2 bits (50), Expect = 4.5
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = -2
Query: 299 PGRPRSNPAKPXWPSAPWHSHITFLTRQTNNTWPTRFSRETLLSFCSN 156
PG R NPA P P H+H + N + + + E L+ N
Sbjct: 157 PGT-RENPAVPFLPPLYTHNHDPVDHKSLKNFYSSNYFAEKLIDQLKN 203
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 24.2 bits (50), Expect = 4.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 9 PPGPQGLHGEKGDQGL 56
PPGP H EK +GL
Sbjct: 891 PPGPNNPHREKTQEGL 906
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 23.8 bits (49), Expect = 5.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 211 ITPGLPGSPGKPCCPFAPTL 152
ITP +P P P P AP++
Sbjct: 510 ITPSVPQPPAAPVVPEAPSV 529
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 23.4 bits (48), Expect = 7.9
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 1 WMVRQVLKAYMEKREIKDWWVDLDYL 78
W++ +L Y+E+ K W LD L
Sbjct: 713 WLLVYLLSFYVERDNYKLLWTQLDLL 738
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 23.4 bits (48), Expect = 7.9
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -3
Query: 289 LVATRQNLFGHLPLGIPISPF*PGKPITPGLPGSPGKPCCPF 164
L R+N G +P+ + S F P P + PG PF
Sbjct: 504 LEGPRKNWTGKIPMFVKKSTFRLAPPDVPIIMVGPGTGVAPF 545
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 23.4 bits (48), Expect = 7.9
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 153 YRVIQEYLGPQRAPRVLHHLFDLVDQVIQVYPPILDLPFLHVSLE 19
YRVI+ G + A FD+ D + ++ L +P L+ +LE
Sbjct: 220 YRVIELAQGWEGAVITHEVWFDIFDFIPMIFTSALLIPSLYPALE 264
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 23.4 bits (48), Expect = 7.9
Identities = 7/21 (33%), Positives = 16/21 (76%)
Frame = +1
Query: 172 NKVSLENLVGQVLLVCLVRKV 234
+K L L+GQ++L+C+++ +
Sbjct: 1135 SKRILSPLIGQIVLICIIQYI 1155
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 23.4 bits (48), Expect = 7.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 75 VIQVYPPILDLPFLHVSLED 16
V++VYPPI L L + D
Sbjct: 163 VVEVYPPIFSLTLLSTNAVD 182
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 23.4 bits (48), Expect = 7.9
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -2
Query: 200 PTRFSRETLLSFC 162
PT+FS +LL+FC
Sbjct: 992 PTQFSHSSLLAFC 1004
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,325,203
Number of Sequences: 5004
Number of extensions: 24835
Number of successful extensions: 91
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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